Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120008.Seq
(681 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 126 2e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 125 3e-29
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 125 3e-29
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 107 7e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 105 2e-23
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 104 6e-23
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 102 2e-22
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 99 2e-21
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 96 2e-20
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 96 2e-20
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 96 2e-20
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 92 3e-19
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 92 3e-19
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 81 5e-16
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 79 4e-15
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 76 2e-14
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 73 2e-13
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 72 4e-13
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 71 7e-13
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 70 1e-12
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 70 1e-12
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 70 1e-12
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 70 2e-12
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 67 9e-12
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 67 9e-12
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 61 8e-10
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 61 8e-10
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 60 1e-09
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 60 2e-09
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 59 3e-09
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 58 4e-09
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 58 4e-09
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 58 4e-09
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 58 5e-09
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 58 7e-09
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 58 7e-09
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 56 2e-08
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 56 3e-08
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 55 4e-08
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 55 5e-08
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 54 9e-08
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 54 1e-07
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 54 1e-07
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 54 1e-07
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 1e-07
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 53 2e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 53 2e-07
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 52 4e-07
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 52 5e-07
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 51 8e-07
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 51 8e-07
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 46 2e-05
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 46 2e-05
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 46 2e-05
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 42 4e-04
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 41 9e-04
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 40 0.001
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 38 0.006
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 37 0.014
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 34 0.076
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.17
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 32 0.40
At1g71390.1 68414.m08243 disease resistance family protein / LRR... 29 2.2
At2g28600.1 68415.m03476 expressed protein 29 2.8
At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containi... 29 3.8
At4g13920.1 68417.m02154 disease resistance family protein / LRR... 28 5.0
At4g13810.1 68417.m02140 disease resistance family protein / LRR... 28 5.0
At3g60970.1 68416.m06823 ABC transporter family protein ABC tran... 28 5.0
At3g60160.1 68416.m06717 ABC transporter family protein similar ... 28 5.0
At3g04670.1 68416.m00500 WRKY family transcription factor simila... 28 5.0
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 28 5.0
At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containi... 28 6.6
At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containi... 28 6.6
At2g33670.1 68415.m04126 seven transmembrane MLO family protein ... 27 8.7
At1g42560.1 68414.m04907 seven transmembrane MLO family protein ... 27 8.7
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 126 bits (303), Expect = 2e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL+Y+LPAIVH+N QP + GDGPI LVLAPTRELA QIQQ A+ FG +S ++ TC
Sbjct: 146 GSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLAPTRELAVQIQQEASKFGSSSKIKTTC 205
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GG PK Q RDL++GVEIVIAT
Sbjct: 206 IYGGVPKGPQVRDLQKGVEIVIAT 229
Score = 122 bits (294), Expect = 2e-28
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRLID +E TNL+R TYLVLDEADRMLDMGF+PQIRKI+ IRPDRQTL WSATWPKE
Sbjct: 231 GRLIDMMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKE 290
Query: 437 VKKLAEDYLGDYIQINIGSLQLSA 508
V++L++ +L + ++ IGS L A
Sbjct: 291 VEQLSKKFLYNPYKVIIGSSDLKA 314
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N I QIVD+ E +K NKL LL++I G++ ++F++TK+
Sbjct: 315 NRAIRQIVDVISESQKYNKLVKLLEDI----MDGSRILVFLDTKK 355
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 125 bits (301), Expect = 3e-29
Identities = 60/84 (71%), Positives = 67/84 (79%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+E
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 437 VKKLAEDYLGDYIQINIGSLQLSA 508
V+ LA +L D + IGS L A
Sbjct: 357 VETLARQFLRDPYKAIIGSTDLKA 380
Score = 119 bits (287), Expect = 2e-27
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+TC
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTC 271
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q RDL RGVEIVIAT
Sbjct: 272 IYGGAPKGPQIRDLRRGVEIVIAT 295
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKR 421
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 125 bits (301), Expect = 3e-29
Identities = 60/84 (71%), Positives = 67/84 (79%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRLID LE TNL+R TYLVLDEADRMLDMGFEPQIRKI+ QIRPDRQTL+WSATWP+E
Sbjct: 297 GRLIDMLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPRE 356
Query: 437 VKKLAEDYLGDYIQINIGSLQLSA 508
V+ LA +L D + IGS L A
Sbjct: 357 VETLARQFLRDPYKAIIGSTDLKA 380
Score = 119 bits (287), Expect = 2e-27
Identities = 56/84 (66%), Positives = 68/84 (80%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTLAY+LPA+VH++ QP + + DGPI L+LAPTRELA QIQ+ + FG S VR+TC
Sbjct: 212 GSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILAPTRELAVQIQEESRKFGLRSGVRSTC 271
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q RDL RGVEIVIAT
Sbjct: 272 IYGGAPKGPQIRDLRRGVEIVIAT 295
Score = 35.1 bits (77), Expect = 0.043
Identities = 19/45 (42%), Positives = 29/45 (64%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q+++I EK N+L LL+++ G+K +IFVETKR
Sbjct: 381 NQSINQVIEIVPTPEKYNRLLTLLKQLMD----GSKILIFVETKR 421
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 107 bits (257), Expect = 7e-24
Identities = 50/78 (64%), Positives = 62/78 (79%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D LE + Q+ + LVLDEADRMLDMGFEPQIRKI+ +I P RQTLM++ATWPKE
Sbjct: 566 GRLNDILEMKMIDFQQVSLLVLDEADRMLDMGFEPQIRKIVNEIPPRRQTLMYTATWPKE 625
Query: 437 VKKLAEDYLGDYIQINIG 490
V+K+A D L + +Q+NIG
Sbjct: 626 VRKIASDLLVNPVQVNIG 643
Score = 90.6 bits (215), Expect = 8e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL Y++PA + + + R +GP L+LAPTRELA QIQ A FG +S + TC
Sbjct: 482 GSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILAPTRELATQIQDEALRFGRSSRISCTC 540
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q ++LERG +IV+AT
Sbjct: 541 LYGGAPKGPQLKELERGADIVVAT 564
Score = 35.5 bits (78), Expect = 0.033
Identities = 20/45 (44%), Positives = 27/45 (60%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N I Q V++ + EKE +L +L+ SQE G+K IIF TKR
Sbjct: 651 NKAITQYVEVVPQMEKERRLEQILR----SQERGSKVIIFCSTKR 691
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 105 bits (253), Expect = 2e-23
Identities = 49/80 (61%), Positives = 63/80 (78%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D LE +L + +YLVLDEADRMLDMGFEPQIRKI+ ++ RQTLM++ATWPKE
Sbjct: 360 GRLNDILEMKRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPTKRQTLMYTATWPKE 419
Query: 437 VKKLAEDYLGDYIQINIGSL 496
V+K+A D L + Q+NIG++
Sbjct: 420 VRKIAADLLVNPAQVNIGNV 439
Score = 87.4 bits (207), Expect = 8e-18
Identities = 43/84 (51%), Positives = 57/84 (67%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ A FG +S + C
Sbjct: 276 GSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLSPTRELATQIQVEALKFGKSSKISCAC 334
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q +++ERGV+IV+AT
Sbjct: 335 LYGGAPKGPQLKEIERGVDIVVAT 358
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q +++ EK ++L +L+ SQEPG+K IIF TKR
Sbjct: 445 NKSITQTIEVLAPMEKHSRLEQILR----SQEPGSKIIIFCSTKR 485
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 104 bits (249), Expect = 6e-23
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK
Sbjct: 289 GRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKG 348
Query: 437 VKKLAEDYLGDYIQINIGSL 496
V+K+A D L + Q+NIG++
Sbjct: 349 VRKIAADLLVNPAQVNIGNV 368
Score = 93.9 bits (223), Expect = 9e-20
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + TC
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q RDLERG +IV+AT
Sbjct: 264 LYGGAPKGPQLRDLERGADIVVAT 287
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKR 414
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 104 bits (249), Expect = 6e-23
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK
Sbjct: 289 GRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKG 348
Query: 437 VKKLAEDYLGDYIQINIGSL 496
V+K+A D L + Q+NIG++
Sbjct: 349 VRKIAADLLVNPAQVNIGNV 368
Score = 93.9 bits (223), Expect = 9e-20
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + TC
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q RDLERG +IV+AT
Sbjct: 264 LYGGAPKGPQLRDLERGADIVVAT 287
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKR 414
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 104 bits (249), Expect = 6e-23
Identities = 49/80 (61%), Positives = 64/80 (80%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D LE +L++ +YLVLDEADRMLDMGFEPQIRKI+++I RQTLM++ATWPK
Sbjct: 289 GRLNDILEMRRISLRQISYLVLDEADRMLDMGFEPQIRKIVKEIPTKRQTLMYTATWPKG 348
Query: 437 VKKLAEDYLGDYIQINIGSL 496
V+K+A D L + Q+NIG++
Sbjct: 349 VRKIAADLLVNPAQVNIGNV 368
Score = 93.9 bits (223), Expect = 9e-20
Identities = 46/84 (54%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL Y++P +H+ R GP LVL+PTRELA QIQ+ A FG +S + TC
Sbjct: 205 GSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLSPTRELATQIQEEAVKFGRSSRISCTC 263
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
++GGAPK Q RDLERG +IV+AT
Sbjct: 264 LYGGAPKGPQLRDLERGADIVVAT 287
Score = 36.7 bits (81), Expect = 0.014
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKR 642
N +I Q +++ EK+ +L +L+ SQEPG+K IIF TKR
Sbjct: 374 NKSITQHIEVVAPMEKQRRLEQILR----SQEPGSKVIIFCSTKR 414
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 102 bits (245), Expect = 2e-22
Identities = 46/83 (55%), Positives = 63/83 (75%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRLID L+ + R +YLVLDEADRM D+GFEPQ+R I+ QIRPDRQTL++SAT P +
Sbjct: 360 GRLIDMLKMKALTMMRASYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPWK 419
Query: 437 VKKLAEDYLGDYIQINIGSLQLS 505
V+KLA + L D I++ +G + ++
Sbjct: 420 VEKLAREILSDPIRVTVGEVGMA 442
Score = 90.2 bits (214), Expect = 1e-18
Identities = 43/84 (51%), Positives = 58/84 (69%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A++LP IVHI +QP ++R +GPI ++ APTRELA QI A F +R +
Sbjct: 275 GSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSA 334
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
V+GG K EQ ++L+ G EIV+AT
Sbjct: 335 VYGGMSKHEQFKELKAGCEIVVAT 358
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 99.1 bits (236), Expect = 2e-21
Identities = 48/93 (51%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +2
Query: 221 LGEGSRNSHCYSGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 391
L G+ C GR+ID L + TNL+R TYLV+DEADRM DMGFEPQI +I++ IR
Sbjct: 516 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIR 575
Query: 392 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 490
PDRQT+++SAT+P++V+ LA L ++I +G
Sbjct: 576 PDRQTVLFSATFPRQVETLARKVLNKPVEIQVG 608
Score = 87.8 bits (208), Expect = 6e-18
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +
Sbjct: 443 GSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVP 502
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
V+GG+ +Q +L+RG EIV+ T
Sbjct: 503 VYGGSGVAQQISELKRGTEIVVCT 526
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 96.3 bits (229), Expect = 2e-20
Identities = 47/93 (50%), Positives = 66/93 (70%), Gaps = 3/93 (3%)
Frame = +2
Query: 221 LGEGSRNSHCYSGRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIR 391
L G+ C GR+ID L + TNL+R T+LV+DEADRM DMGFEPQI +II+ IR
Sbjct: 649 LKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTFLVMDEADRMFDMGFEPQITRIIQNIR 708
Query: 392 PDRQTLMWSATWPKEVKKLAEDYLGDYIQINIG 490
P+RQT+++SAT+P++V+ LA L ++I +G
Sbjct: 709 PERQTVLFSATFPRQVETLARKVLNKPVEIQVG 741
Score = 91.1 bits (216), Expect = 6e-19
Identities = 42/84 (50%), Positives = 55/84 (65%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKTL ++LP + HI +QPP+ GDGPI LV+APTREL QQI F +R
Sbjct: 576 GSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVP 635
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
V+GG+ +Q +L+RG EIV+ T
Sbjct: 636 VYGGSGVAQQISELKRGTEIVVCT 659
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 95.9 bits (228), Expect = 2e-20
Identities = 46/82 (56%), Positives = 64/82 (78%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPD---RQTLMWSAT 424
GRL D LE+G +LQ +L LDEADRMLDMGFEPQIRKI++Q+ P RQT+++SAT
Sbjct: 283 GRLNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSAT 342
Query: 425 WPKEVKKLAEDYLGDYIQINIG 490
+P+E+++LA D+L +YI + +G
Sbjct: 343 FPREIQRLASDFLSNYIFLAVG 364
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/89 (43%), Positives = 53/89 (59%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSY 167
GSGKT A+ P I I I R G P+A++L+PTRELA QI A F + +
Sbjct: 193 GSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILSPTRELACQIHDEARKFSYQTG 252
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
V+ +GG P +Q R+LERGV+I++AT
Sbjct: 253 VKVVVAYGGTPVNQQIRELERGVDILVAT 281
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 95.9 bits (228), Expect = 2e-20
Identities = 46/82 (56%), Positives = 63/82 (76%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSAT 424
GRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQTL++SAT
Sbjct: 296 GRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTLLFSAT 355
Query: 425 WPKEVKKLAEDYLGDYIQINIG 490
+P+E+++LA D+L +YI + +G
Sbjct: 356 FPREIQRLAADFLANYIFLAVG 377
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/89 (42%), Positives = 54/89 (60%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSY 167
GSGKT A+ P I I ++R G P+A++L+PTRELA QI A F + +
Sbjct: 206 GSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILSPTRELASQIHDEAKKFSYQTG 265
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
V+ +GG P +Q R+LERGV+I++AT
Sbjct: 266 VKVVVAYGGTPINQQLRELERGVDILVAT 294
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/82 (52%), Positives = 62/82 (75%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSAT 424
GRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT
Sbjct: 288 GRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSAT 347
Query: 425 WPKEVKKLAEDYLGDYIQINIG 490
+P ++++LA D++ +YI + +G
Sbjct: 348 FPSQIQRLAADFMSNYIFLAVG 369
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSY 167
GSGKT A+ P I I + R G P A++L+PTRELA QI A F + +
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG 257
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
V+ +GG P +Q R+LERG +I++AT
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVAT 286
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 517 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKLRTYQ 660
I Q V+ QE +K + L LL ++Q+ + T++FVETKR T +
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLE 425
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 92.3 bits (219), Expect = 3e-19
Identities = 43/82 (52%), Positives = 62/82 (75%), Gaps = 4/82 (4%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI----RPDRQTLMWSAT 424
GRL D LE+ ++Q +L LDEADRMLDMGFEPQIRKI+EQ+ R RQT+++SAT
Sbjct: 288 GRLNDLLERARVSMQMIRFLALDEADRMLDMGFEPQIRKIVEQMDMPPRGVRQTMLFSAT 347
Query: 425 WPKEVKKLAEDYLGDYIQINIG 490
+P ++++LA D++ +YI + +G
Sbjct: 348 FPSQIQRLAADFMSNYIFLAVG 369
Score = 68.5 bits (160), Expect = 4e-12
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSY 167
GSGKT A+ P I I + R G P A++L+PTRELA QI A F + +
Sbjct: 198 GSGKTAAFCFPIISGIMKDQHVERPRGSRAVYPFAVILSPTRELACQIHDEAKKFSYQTG 257
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
V+ +GG P +Q R+LERG +I++AT
Sbjct: 258 VKVVVAYGGTPIHQQLRELERGCDILVAT 286
Score = 33.9 bits (74), Expect = 0.10
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = +1
Query: 517 ILQIVDICQEHEKENKLNVLLQEIGQSQEPGAKTIIFVETKRKLRTYQ 660
I Q V+ QE +K + L LL ++Q+ + T++FVETKR T +
Sbjct: 378 ITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADTLE 425
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 81.4 bits (192), Expect = 5e-16
Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 1/85 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D +E L +++VLDEADRMLDMGFE +R I+ RQ +M+SATWP +
Sbjct: 250 GRLRDLIESNVLRLSDVSFVVLDEADRMLDMGFEEPVRFILSNTNKVRQMVMFSATWPLD 309
Query: 437 VKKLAEDYLG-DYIQINIGSLQLSA 508
V KLA++++ + I++ IGS+ L+A
Sbjct: 310 VHKLAQEFMDPNPIKVIIGSVDLAA 334
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/88 (44%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI-NNQPPIRRGD---GPIALVLAPTRELAQQIQQVAADFGHTSYV 170
GSGKTLA+ +PAI+H+ I G P LVL+PTRELA QI V + G +
Sbjct: 161 GSGKTLAFGIPAIMHVLKKNKKIGGGSKKVNPTCLVLSPTRELAVQISDVLREAGEPCGL 220
Query: 171 RNTCVFGGAPKREQARDLERGVEIVIAT 254
++ CV+GG+ K Q + GV+IVI T
Sbjct: 221 KSICVYGGSSKGPQISAIRSGVDIVIGT 248
Score = 30.7 bits (66), Expect = 0.93
Identities = 10/32 (31%), Positives = 23/32 (71%)
Frame = +1
Query: 508 NHNILQIVDICQEHEKENKLNVLLQEIGQSQE 603
NH+++QI+++ E ++ +L LL++ +SQ+
Sbjct: 335 NHDVMQIIEVLDERARDQRLIALLEKYHKSQK 366
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 78.6 bits (185), Expect = 4e-15
Identities = 40/87 (45%), Positives = 54/87 (62%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPI---RRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 173
GSGKT A++LP + +I+ PP+ +GP A+V+APTRELAQQI++ F H R
Sbjct: 360 GSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFR 419
Query: 174 NTCVFGGAPKREQARDLERGVEIVIAT 254
T + GG EQ + +G EIVIAT
Sbjct: 420 VTSIVGGQSIEEQGLKITQGCEIVIAT 446
Score = 70.1 bits (164), Expect = 1e-12
Identities = 40/96 (41%), Positives = 58/96 (60%), Gaps = 17/96 (17%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE-----QIRPD-------- 397
GRLID LE+ L +C Y+VLDEADRM+DMGFEPQ+ +++ ++P+
Sbjct: 448 GRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVAGVLDAMPSSNLKPENEEEELDE 507
Query: 398 ----RQTLMWSATWPKEVKKLAEDYLGDYIQINIGS 493
R T M+SAT P V++LA YL + + + IG+
Sbjct: 508 KKIYRTTYMFSATMPPGVERLARKYLRNPVVVTIGT 543
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 76.2 bits (179), Expect = 2e-14
Identities = 34/78 (43%), Positives = 50/78 (64%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D L K +L C YL LDEADR++D+GFE IR++ + + RQTL++SAT P +
Sbjct: 287 GRLKDMLAKKKMSLDACRYLTLDEADRLVDLGFEDDIREVFDHFKSQRQTLLFSATMPTK 346
Query: 437 VKKLAEDYLGDYIQINIG 490
++ A L + +N+G
Sbjct: 347 IQIFARSALVKPVTVNVG 364
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/93 (39%), Positives = 53/93 (56%), Gaps = 9/93 (9%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGHT 161
GSGKTL ++LP I+ + PI G+GPI L++ P+RELA+Q ++Q A
Sbjct: 193 GSGKTLVFVLPMIMIALQEEMMMPIAAGEGPIGLIVCPSRELARQTYEVVEQFVAPLVEA 252
Query: 162 SY--VRNTCVFGGAPKREQARDLERGVEIVIAT 254
Y +R+ GG R Q ++RGV IV+AT
Sbjct: 253 GYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 72.9 bits (171), Expect = 2e-13
Identities = 35/77 (45%), Positives = 51/77 (66%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ID +E + L YLVLDEAD+ML +GFE + I+E + RQ++++SAT P
Sbjct: 237 GRIIDLIEGRSLKLGEVEYLVLDEADQMLAVGFEEAVESILENLPTKRQSMLFSATMPTW 296
Query: 437 VKKLAEDYLGDYIQINI 487
VKKLA YL + + I++
Sbjct: 297 VKKLARKYLDNPLNIDL 313
Score = 56.8 bits (131), Expect = 1e-08
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQP----PIRR-GDGPIALVLAPTRELAQQIQQVAADFGHTSY 167
G+GKTLA+ +P I + + RR G P LVLAPTRELA+Q+++ + Y
Sbjct: 149 GTGKTLAFGIPIIKRLTEEAGDYTAFRRSGRLPKFLVLAPTRELAKQVEKEIKE--SAPY 206
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ CV+GG Q L RGV++V+ T
Sbjct: 207 LSTVCVYGGVSYTIQQSALTRGVDVVVGT 235
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 71.7 bits (168), Expect = 4e-13
Identities = 33/78 (42%), Positives = 48/78 (61%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GRL D L K +L C L LDEADR++D+GFE IR + + + RQTL++SAT P +
Sbjct: 238 GRLKDILAKKKMSLDACRLLTLDEADRLVDLGFEDDIRHVFDHFKSQRQTLLFSATMPAK 297
Query: 437 VKKLAEDYLGDYIQINIG 490
++ A L + +N+G
Sbjct: 298 IQIFATSALVKPVTVNVG 315
Score = 64.5 bits (150), Expect = 6e-11
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 9/93 (9%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQP---PIRRGDGPIALVLAPTRELAQQ----IQQVAADFGHT 161
GSGKTL ++LP I+ + PI G+GPIALV+ P+RELA+Q ++Q A
Sbjct: 144 GSGKTLVFVLPMIILALQEEIMMPIAAGEGPIALVICPSRELAKQTYDVVEQFVASLVED 203
Query: 162 SY--VRNTCVFGGAPKREQARDLERGVEIVIAT 254
Y +R+ GG R Q +++GV IV+AT
Sbjct: 204 GYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVAT 236
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 70.9 bits (166), Expect = 7e-13
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D +KG L+ C LV+DEAD++L + F+P I ++I+ + RQ LM+SAT+P
Sbjct: 281 GRILDLAKKGVCVLKDCAMLVMDEADKLLSVEFQPSIEELIQFLPESRQILMFSATFPVT 340
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + YL IN+ L L +T ++
Sbjct: 341 VKSFKDRYLKKPYIINLMDQLTLMGVTQYY 370
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+ +P + I+ + + + A++L PTRELA Q QV + +
Sbjct: 201 GTGKTGAFCIPTLEKIDPENNVIQ-----AVILVPTRELALQTSQVCKELSKYLKIEVMV 255
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG R+ L + V +++ T
Sbjct: 256 TTGGTSLRDDIMRLYQPVHLLVGT 279
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P
Sbjct: 258 GRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVT 317
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + +L + IN+ L L IT F+
Sbjct: 318 VKDFKDRFLTNPYVINLMDELTLKGITQFY 347
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 178 GTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG ++ L + V +++ T
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGT 256
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/90 (38%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D +KG L+ C+ LV+DEAD++L F+P + +I + RQ LM+SAT+P
Sbjct: 258 GRILDLTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLISFLPESRQILMFSATFPVT 317
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + +L + IN+ L L IT F+
Sbjct: 318 VKDFKDRFLTNPYVINLMDELTLKGITQFY 347
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+ +P + I+ + + A+++ PTRELA Q QV + G ++
Sbjct: 178 GTGKTAAFCIPVLEKIDQDNNVIQ-----AVIIVPTRELALQTSQVCKELGKHLKIQVMV 232
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG ++ L + V +++ T
Sbjct: 233 TTGGTSLKDDIMRLYQPVHLLVGT 256
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 70.1 bits (164), Expect = 1e-12
Identities = 29/77 (37%), Positives = 52/77 (67%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ID +++G NL ++VLDEAD+ML +GF + I+E++ RQ++M+SAT P
Sbjct: 235 GRVIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILEKLPEKRQSMMFSATMPSW 294
Query: 437 VKKLAEDYLGDYIQINI 487
++ L + YL + + +++
Sbjct: 295 IRSLTKKYLNNPLTVDL 311
Score = 62.1 bits (144), Expect = 3e-10
Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI-NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 179
G+GKTLA+ +P I I RG P+ LVLAPTRELA+Q+++ +F ++ +T
Sbjct: 151 GTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEK---EFRESAPSLDT 207
Query: 180 -CVFGGAPKREQARDLERGVEIVIAT 254
C++GG P +Q R L+ GV++ + T
Sbjct: 208 ICLYGGTPIGQQMRQLDYGVDVAVGT 233
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 69.7 bits (163), Expect = 2e-12
Identities = 29/77 (37%), Positives = 52/77 (67%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ID +++G NL ++VLDEAD+ML +GF + I++++ RQ++M+SAT P
Sbjct: 247 GRIIDLMKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQKLPAKRQSMMFSATMPSW 306
Query: 437 VKKLAEDYLGDYIQINI 487
++ L + YL + + I++
Sbjct: 307 IRSLTKKYLNNPLTIDL 323
Score = 59.7 bits (138), Expect = 2e-09
Identities = 34/86 (39%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINN-QPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 179
G+GKTLA+ +P I I RG P LVLAPTRELA+Q+++ +F ++ +T
Sbjct: 163 GTGKTLAFGIPIIDKIIKFNAKHGRGKNPQCLVLAPTRELARQVEK---EFRESAPSLDT 219
Query: 180 -CVFGGAPKREQARDLERGVEIVIAT 254
C++GG P +Q R+L G+++ + T
Sbjct: 220 ICLYGGTPIGQQMRELNYGIDVAVGT 245
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 67.3 bits (157), Expect = 9e-12
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P
Sbjct: 251 GRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVT 310
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + +L IN+ L L +T ++
Sbjct: 311 VKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 171 GTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMV 225
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG R+ L + V +++ T
Sbjct: 226 TTGGTSLRDDIMRLHQPVHLLVGT 249
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 67.3 bits (157), Expect = 9e-12
Identities = 33/90 (36%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D +KG L+ C LV+DEAD++L F+P + ++I+ + +RQ LM+SAT+P
Sbjct: 251 GRILDLTKKGVCVLKDCAMLVMDEADKLLSAEFQPSLEELIQFLPQNRQFLMFSATFPVT 310
Query: 437 VKKLAEDYLGDYIQINI-GSLQLSAITTFF 523
VK + +L IN+ L L +T ++
Sbjct: 311 VKAFKDRHLRKPYVINLMDQLTLMGVTQYY 340
Score = 39.9 bits (89), Expect = 0.002
Identities = 24/84 (28%), Positives = 41/84 (48%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
G+GKT A+ +P + I+ + + A++L PTRELA Q QV + ++
Sbjct: 171 GTGKTGAFCIPVLEKIDPNNNVIQ-----AMILVPTRELALQTSQVCKELSKYLNIQVMV 225
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
GG R+ L + V +++ T
Sbjct: 226 TTGGTSLRDDIMRLHQPVHLLVGT 249
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 60.9 bits (141), Expect = 8e-10
Identities = 37/92 (40%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Frame = +2
Query: 248 CYSGRLIDFLEKGTTNLQ--RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSA 421
C GRL+ +++ T N + + L+LDEADR+LD F+ Q+ II Q+ RQTL++SA
Sbjct: 199 CAPGRLLQHMDE-TPNFECPQLQILILDEADRVLDSAFKGQLDPIISQLPKHRQTLLFSA 257
Query: 422 TWPKEVKKLAEDYLGDYIQINIGSLQLSAITT 517
T K+VK LA L D I++ + ++A T
Sbjct: 258 TQTKKVKDLARLSLRDPEYISVHAEAVTATPT 289
Score = 35.9 bits (79), Expect = 0.025
Identities = 17/42 (40%), Positives = 28/42 (66%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 128
GSGKTLA+++P + ++ + DG ++++PTRELA Q
Sbjct: 118 GSGKTLAFVIPILEKLHRE-RWSPEDGVGCIIISPTRELAAQ 158
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 60.9 bits (141), Expect = 8e-10
Identities = 32/86 (37%), Positives = 48/86 (55%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHIN-NQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYVRN 176
G+GKT+AY+ P I H+ + P + R G ALV+ PTREL Q+ + H ++
Sbjct: 77 GTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVIVPTRELCLQVYETLEKLLHRFHWIVP 136
Query: 177 TCVFGGAPKREQARDLERGVEIVIAT 254
V GG K ++ L +G+ I+IAT
Sbjct: 137 GYVMGGEKKAKEKARLRKGISILIAT 162
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 60.1 bits (139), Expect = 1e-09
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRR-----GDGPIALVLAPTRELAQQIQQVAADFGHTSY 167
G GKTLA++LP + + N P + G P LVL PTRELA+Q+ +G +
Sbjct: 143 GQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLG 202
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ + C++GG Q L+RGV+IV+ T
Sbjct: 203 LSSCCLYGGDSYPVQEGKLKRGVDIVVGT 231
Score = 49.2 bits (112), Expect = 2e-06
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR--QTLMWSATWP 430
GR+ D +E+ + + VLDEAD ML MGF + I+ ++ QTL++SAT P
Sbjct: 233 GRIKDHIERQNLDFSYLQFRVLDEADEMLRMGFVEDVELILGKVEDSTKVQTLLFSATLP 292
Query: 431 KEVKKLAEDYL 463
VK ++ +L
Sbjct: 293 SWVKNISNRFL 303
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 59.7 bits (138), Expect = 2e-09
Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 3/67 (4%)
Frame = +2
Query: 257 GRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 427
GRL D +E T L+ LVLDEAD +LDMGF I +II + +RQT ++SAT
Sbjct: 191 GRLKDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIISAVPKERQTFLFSATV 250
Query: 428 PKEVKKL 448
P+EV+++
Sbjct: 251 PEEVRQI 257
Score = 40.7 bits (91), Expect = 9e-04
Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGD--GPI-ALVLAPTRELAQQIQQVAADF--GHTSY 167
G+GKT+A++LP+I + PP + PI ALV+ PTRELA Q A H S
Sbjct: 101 GTGKTVAFLLPSIEVVVKSPPTSPDNKRPPILALVICPTRELANQAATEANTLLKYHPSI 160
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ G EQ R +I++AT
Sbjct: 161 GVQVVIGGTRLGLEQKRMQTNPCQILVAT 189
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 58.8 bits (136), Expect = 3e-09
Identities = 28/69 (40%), Positives = 47/69 (68%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 GRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 427
GRL+D +E T+ L ++DEAD +LD+GF+ + KII+ + RQ+L++SAT
Sbjct: 513 GRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFKRDVEKIIDCLPRQRQSLLFSATI 572
Query: 428 PKEVKKLAE 454
PKEV+++++
Sbjct: 573 PKEVRRVSQ 581
Score = 37.5 bits (83), Expect = 0.008
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIA----LVLAPTRELAQQI--QQVAADFGHTS 164
G+GK++A++LPAI + +G +A L+L PTRELA QI + A H
Sbjct: 422 GTGKSMAFLLPAIETVLKAMNSGKGVHKVAPIFVLILCPTRELASQIAAEGKALLKNHDG 481
Query: 165 YVRNTCVFGGAPKREQARDLERGVEIVIAT 254
T + G + +Q R +I+IAT
Sbjct: 482 IGVQTLIGGTRFRLDQQRLESEPCQILIAT 511
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/81 (41%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Frame = +2
Query: 257 GRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWP 430
GRL D + KG + L+ YLVLDEADR+L+ FE + +I+E+I +R+T ++SAT
Sbjct: 148 GRLWDHMSDTKGFS-LKSLKYLVLDEADRLLNEDFEKSLNQILEEIPLERKTFLFSATMT 206
Query: 431 KEVKKLAEDYLGDYIQINIGS 493
K+V+KL L + ++I S
Sbjct: 207 KKVRKLQRACLRNPVKIEAAS 227
Score = 40.7 bits (91), Expect = 9e-04
Identities = 29/91 (31%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI-----NNQPPIRRGDGP--IALVLAPTRELAQQIQQVAADFGHT 161
GSGKT A+ +P + + +++P R P A VL+PTRELA QI + G
Sbjct: 56 GSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGAD 115
Query: 162 SYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
+R + GG + +Q L + +++AT
Sbjct: 116 ISLRCAVLVGGIDRMQQTIALGKRPHVIVAT 146
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 58.4 bits (135), Expect = 4e-09
Identities = 34/89 (38%), Positives = 49/89 (55%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDG-----PIALVLAPTRELAQQIQQVAADFGHTSY 167
GSGKTLAY+LP IV + + G P +VL PTREL++Q+ +VA H +
Sbjct: 159 GSGKTLAYLLP-IVQLMREDEANLGKKTKPRRPRTVVLCPTRELSEQVYRVAKSISHHAR 217
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
R+ V GG+ R Q L +++V+ T
Sbjct: 218 FRSILVSGGSRIRPQEDSLNNAIDMVVGT 246
Score = 47.6 bits (108), Expect = 8e-06
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRP------DR--QTLM 412
GR++ +E+G YLVLDEAD M D GF P+IRK + + D+ QT++
Sbjct: 248 GRILQHIEEGNMVYGDIAYLVLDEADTMFDRGFGPEIRKFLAPLNQRALKTNDQGFQTVL 307
Query: 413 WSATWPKEVKKLAED 457
+AT V+KL ++
Sbjct: 308 VTATMTMAVQKLVDE 322
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 58.4 bits (135), Expect = 4e-09
Identities = 28/69 (40%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Frame = +2
Query: 257 GRLIDFLEKG---TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 427
GRL+D +E T+ L ++DEAD +LD+GF + KII+ + RQ+L++SAT
Sbjct: 466 GRLLDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEKIIDCLPRQRQSLLFSATI 525
Query: 428 PKEVKKLAE 454
PKEV+++++
Sbjct: 526 PKEVRRVSQ 534
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI----NNQPPIRRGDGPIALVLAPTRELAQQI--QQVAADFGHTS 164
G+GK++A++LPAI + N+ + + AL+L PTRELA QI + A H
Sbjct: 375 GTGKSMAFLLPAIETVLKAMNSGKGVNKVAPIFALILCPTRELASQIAAEGKALLKFHDG 434
Query: 165 YVRNTCVFGGAPKREQARDLERGVEIVIAT 254
T + G K +Q R +I+IAT
Sbjct: 435 IGVQTLIGGTRFKLDQQRLESEPCQILIAT 464
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 58.0 bits (134), Expect = 5e-09
Identities = 31/67 (46%), Positives = 42/67 (62%), Gaps = 3/67 (4%)
Frame = +2
Query: 257 GRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 427
GRL D +E + T L LVLDEAD +LDMGF I +II + RQT ++SAT
Sbjct: 519 GRLKDHIENTSGFATRLMGVKVLVLDEADHLLDMGFRRDIERIIAAVPKQRQTFLFSATV 578
Query: 428 PKEVKKL 448
P+EV+++
Sbjct: 579 PEEVRQI 585
Score = 44.0 bits (99), Expect = 9e-05
Identities = 32/89 (35%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELAQQIQQVAADF--GHTSY 167
G+GKT+A++LPAI + PP R I LV+ PTRELA Q A H S
Sbjct: 429 GTGKTVAFLLPAIEAVIKSPPASRDSRQPPIIVLVVCPTRELASQAAAEANTLLKYHPSI 488
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ G EQ R +I++AT
Sbjct: 489 GVQVVIGGTKLPTEQRRMQTNPCQILVAT 517
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 173
GSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G +
Sbjct: 157 GSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFK 216
Query: 174 NTCVFGGAPKREQARDLERGVEIVIAT 254
V GG P Q +++GVE++I T
Sbjct: 217 TALVVGGDPMSGQLYRIQQGVELIIGT 243
Score = 54.4 bits (125), Expect = 7e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D L K T L VLDE D ML GF Q+ +I + + Q L++SAT +E
Sbjct: 245 GRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISRE 303
Query: 437 VKKLAEDYLGDYIQINIGS 493
V+K+ + I ++IG+
Sbjct: 304 VEKVGGSLAKEIILVSIGN 322
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 57.6 bits (133), Expect = 7e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVR 173
GSGKT ++++P I +++ P + P+A+VLAPTREL Q++ A G +
Sbjct: 20 GSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLAPTRELCVQVEDQAKMLGKGLPFK 79
Query: 174 NTCVFGGAPKREQARDLERGVEIVIAT 254
V GG P Q +++GVE++I T
Sbjct: 80 TALVVGGDPMSGQLYRIQQGVELIIGT 106
Score = 54.4 bits (125), Expect = 7e-08
Identities = 29/79 (36%), Positives = 44/79 (55%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR++D L K T L VLDE D ML GF Q+ +I + + Q L++SAT +E
Sbjct: 108 GRVVDLLSKHTIELDNIMTFVLDEVDCMLQRGFRDQVMQIFQAL-SQPQVLLFSATISRE 166
Query: 437 VKKLAEDYLGDYIQINIGS 493
V+K+ + I ++IG+
Sbjct: 167 VEKVGGSLAKEIILVSIGN 185
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 56.0 bits (129), Expect = 2e-08
Identities = 29/84 (34%), Positives = 51/84 (60%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+++P + + P +G G AL+L+PTR+LA+Q + + G + +R +
Sbjct: 75 GSGKTAAFLIPMLEKLKQHVP--QG-GVRALILSPTRDLAEQTLKFTKELGKFTDLRVSL 131
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG +Q +L +G +++IAT
Sbjct: 132 LVGGDSMEDQFEELTKGPDVIIAT 155
Score = 53.2 bits (122), Expect = 2e-07
Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Frame = +2
Query: 257 GRLIDFL-EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL+ L E L+ Y+V DEAD + MGF Q+ +I+ Q+ +RQTL++SAT P
Sbjct: 157 GRLMHLLSEVDDMTLRTVEYVVFDEADSLFGMGFAEQLHQILTQLSENRQTLLFSATLPS 216
Query: 434 EVKKLAE 454
+ + A+
Sbjct: 217 ALAEFAK 223
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 55.6 bits (128), Expect = 3e-08
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ D +++ + + L+LDE+D ML GF+ QI + + PD Q + SAT P E
Sbjct: 162 GRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPDLQVCLVSATLPHE 221
Query: 437 VKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
+ ++ ++ + ++I + L L I FF
Sbjct: 222 ILEMTSKFMTEPVKILVKRDELTLEGIKQFF 252
Score = 41.1 bits (92), Expect = 7e-04
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +3
Query: 90 ALVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
AL+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V T
Sbjct: 106 ALILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGT 160
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 55.2 bits (127), Expect = 4e-08
Identities = 28/78 (35%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEK-GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL D +E+ + + L+LDEADR+L+MGF+ Q+ II ++ R+T ++SAT +
Sbjct: 151 GRLSDIMERMEILDFRNLEILILDEADRLLEMGFQRQVNYIISRLPKQRRTGLFSATQTE 210
Query: 434 EVKKLAEDYLGDYIQINI 487
V++LA+ L + +++ +
Sbjct: 211 GVEELAKAGLRNPVRVEV 228
Score = 42.7 bits (96), Expect = 2e-04
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQ---PPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYV 170
GSGKTLA+++P + + PP + + ++++PTREL+ QI VA F T + V
Sbjct: 63 GSGKTLAFVVPLVEILRRSTSFPP--KPHQVMGVIISPTRELSTQIYNVAQPFVSTLANV 120
Query: 171 RNTCVFGGAPKREQARDL-ERGVEIVIAT 254
+ + GG + + + E G ++I T
Sbjct: 121 NSVLLVGGREVKADMKIIEEEGCNVLIGT 149
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 54.8 bits (126), Expect = 5e-08
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ D +++G+ + LVLDE+D ML G + QI + + D Q + SAT P+E
Sbjct: 149 GRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHDIQVCLISATLPQE 208
Query: 437 VKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
+ ++ E ++ D ++I + L L I ++
Sbjct: 209 ILEMTEKFMTDPVRILVKPDELTLEGIKQYY 239
Score = 39.9 bits (89), Expect = 0.002
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = +3
Query: 93 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V T
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGT 147
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 54.0 bits (124), Expect = 9e-08
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +2
Query: 257 GRLIDFLEKG-TTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GR+ID L + +L L+LDEADR+L GF +I +++ RQT+++SAT +
Sbjct: 297 GRMIDHLRNSMSVDLDDLAVLILDEADRLLQTGFATEITELVRLCPKRRQTMLFSATMTE 356
Query: 434 EVKKLAE 454
EVK+L +
Sbjct: 357 EVKELVK 363
Score = 48.8 bits (111), Expect = 3e-06
Identities = 30/84 (35%), Positives = 44/84 (52%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+ LP + + +P +R L+L PTRELA QI + + + ++
Sbjct: 214 GSGKTAAFALPTLERLLFRP--KRVFATRVLILTPTRELAVQIHSMIQNLAQFTDIKCGL 271
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG REQ L +IV+AT
Sbjct: 272 IVGGLSVREQEVVLRSMPDIVVAT 295
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNL-QRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL+D LE + + +LV+DEADR+L+ FE ++KI+ + RQT ++SAT
Sbjct: 285 GRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKTRQTSLFSATQSA 344
Query: 434 EVKKLAEDYLGDYIQINI 487
+V+ LA L + I++
Sbjct: 345 KVEDLARVSLTSPVYIDV 362
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADF--GHTSYVRN 176
GSGKTLA+++PA V + + +G LV+ PTRELA Q VA + H+ V
Sbjct: 201 GSGKTLAFLIPA-VELLYRVKFTPRNGTGVLVICPTRELAIQSYGVAKELLKYHSQTVGK 259
Query: 177 TCVFGGAPKREQARDLERGVEIVIAT 254
V GG ++ +A L +GV +++AT
Sbjct: 260 --VIGGEKRKTEAEILAKGVNLLVAT 283
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Frame = +2
Query: 257 GRLIDFLEKGT---TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATW 427
GRL D ++ + T L LVLDEAD +LDMGF +I +II + RQT ++SAT
Sbjct: 217 GRLKDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIAAVPKQRQTFLFSATV 276
Query: 428 PKEVKKL 448
EV+++
Sbjct: 277 SDEVRQI 283
Score = 40.7 bits (91), Expect = 9e-04
Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGP---IALVLAPTRELA-QQIQQVAADFGHTSYV 170
G+GKT+A++LP+I + PP R + I LV+ PTRELA Q + + +
Sbjct: 127 GTGKTVAFLLPSIEAVIKAPPASRDNRHPPIIVLVVCPTRELACQAAAEANILLKYHPSI 186
Query: 171 RNTCVFGGAPKREQARDLERG-VEIVIAT 254
V GG + R L++ +I++AT
Sbjct: 187 GVQVVIGGTKLPTEQRRLQKSPCQILVAT 215
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 53.6 bits (123), Expect = 1e-07
Identities = 34/89 (38%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINN---QPPIRRGDG-PIALVLAPTRELAQQIQQVAADFGHTSY- 167
GSGKTLAY++P I + Q + G P +VL PT ELA Q+ +
Sbjct: 421 GSGKTLAYLVPVIQRLREEELQGHSKSSPGCPRVIVLVPTAELASQVLANCRSISKSGVP 480
Query: 168 VRNTCVFGGAPKREQARDLERGVEIVIAT 254
R+ V GG +R Q +LE+GV+++IAT
Sbjct: 481 FRSMVVTGGFRQRTQLENLEQGVDVLIAT 509
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 53.6 bits (123), Expect = 1e-07
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 1/80 (1%)
Frame = +2
Query: 257 GRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT +
Sbjct: 151 GRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQ 210
Query: 434 EVKKLAEDYLGDYIQINIGS 493
V LA+ L + +++ G+
Sbjct: 211 AVADLAKAGLRNAMEVISGA 230
Score = 46.8 bits (106), Expect = 1e-05
Identities = 33/89 (37%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHT-SYV 170
GSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA F T V
Sbjct: 63 GSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVAEPFVSTLPNV 120
Query: 171 RNTCVFGGAPKREQARDL-ERGVEIVIAT 254
+ + GG L E G ++I T
Sbjct: 121 NSVLLVGGREVEADMNTLEEEGANLLIGT 149
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 52.8 bits (121), Expect = 2e-07
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 2/118 (1%)
Frame = +2
Query: 176 HVCVWWCS*KRASPGLGEGSRNSHCYSGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 355
H CV S + L G GR+ D L++ + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEMLSRGF 198
Query: 356 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
+ QI I + + P Q ++SAT P E ++ ++ ++I + L L I F+
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
Score = 50.0 bits (114), Expect = 1e-06
Identities = 27/55 (49%), Positives = 33/55 (60%)
Frame = +3
Query: 90 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ T
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = +2
Query: 302 RCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 454
R +LVLDEADR+LD+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 203 RTKFLVLDEADRVLDVGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 44.4 bits (100), Expect = 7e-05
Identities = 32/84 (38%), Positives = 41/84 (48%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNTC 182
GSGKT A+ LP I+H + P G ALV+ PTRELA Q+ + G +R +
Sbjct: 105 GSGKTAAFALP-ILHRLAEDPY----GVFALVVTPTRELAFQLAEQFKALGSCLNLRCSV 159
Query: 183 VFGGAPKREQARDLERGVEIVIAT 254
+ GG Q L IVI T
Sbjct: 160 IVGGMDMLTQTMSLVSRPHIVITT 183
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 52.0 bits (119), Expect = 4e-07
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 1/67 (1%)
Frame = +2
Query: 257 GRLIDFLEKGT-TNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GRL D +++ + + L+LDEADR+LDMGF+ Q+ II ++ R+T ++SAT +
Sbjct: 144 GRLSDMMKRMEFLDFRNLEILILDEADRLLDMGFQKQVNYIISRLPKQRRTGLFSATQTQ 203
Query: 434 EVKKLAE 454
V LA+
Sbjct: 204 AVADLAK 210
Score = 40.3 bits (90), Expect = 0.001
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI---NNQPPIRRGDGPIALVLAPTRELAQQIQQVA 143
GSGKTLA++LP I I N+ PP + + ++++PTREL+ QI +VA
Sbjct: 64 GSGKTLAFLLPFIEIIRRSNSYPP--KPHQVMGVIISPTRELSAQIHKVA 111
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 51.6 bits (118), Expect = 5e-07
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 1/85 (1%)
Frame = +3
Query: 3 GSGKTLAYILPAI-VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFGHTSYVRNT 179
GSGKTLA+++PA+ + + R G G +V+ PTRELA Q + VA + +
Sbjct: 136 GSGKTLAFLIPAVELLFKERFSPRNGTG--VIVICPTRELAIQTKNVAEELLKHHSQTVS 193
Query: 180 CVFGGAPKREQARDLERGVEIVIAT 254
V GG +R +A+ + G +VIAT
Sbjct: 194 MVIGGNNRRSEAQRIASGSNLVIAT 218
Score = 51.6 bits (118), Expect = 5e-07
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Frame = +2
Query: 221 LGEGSRNSHCYSGRLIDFLEKGTTNLQR-CTYLVLDEADRMLDMGFEPQIRKIIEQIRPD 397
+ GS GRL+D L+ + + LV+DEADR+L+ FE + KI++ +
Sbjct: 208 IASGSNLVIATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKT 267
Query: 398 RQTLMWSATWPKEVKKLAEDYLGDYIQINI 487
RQT ++SAT +VK LA L + +++
Sbjct: 268 RQTALFSATQTSKVKDLARVSLTSPVHVDV 297
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/55 (49%), Positives = 33/55 (60%)
Frame = +3
Query: 90 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ T
Sbjct: 112 ALVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGT 166
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKE 436
GR+ D L + + VLDEAD ML GF+ QI I + + Q ++SAT P E
Sbjct: 168 GRVFDLLRRQSLRADAIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKVQVGVFSATMPPE 227
Query: 437 VKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
++ ++ ++I + L L I F+
Sbjct: 228 ALEITRKFMNKPVRILVKRDELTLEGIKQFY 258
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 50.8 bits (116), Expect = 8e-07
Identities = 27/55 (49%), Positives = 33/55 (60%)
Frame = +3
Query: 90 ALVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
ALVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ T
Sbjct: 110 ALVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGT 164
Score = 50.4 bits (115), Expect = 1e-06
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Frame = +2
Query: 176 HVCVWWCS*KRASPGLGEGSRNSHCYSGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGF 355
H CV S + L G GR+ D L + + VLDEAD ML GF
Sbjct: 139 HACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGF 198
Query: 356 EPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI--GSLQLSAITTFF 523
+ QI I + + P Q ++SAT P E ++ ++ ++I + L L I F+
Sbjct: 199 KDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRDELTLEGIKQFY 256
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 434 EVKKLAEDYLGDYIQINI 487
E++ + + ++ D ++I +
Sbjct: 235 EIRPVCKKFMQDPMEIYV 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 131
G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 93 GMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT K
Sbjct: 92 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 151
Query: 434 EVKKLAEDYLGDYIQINI 487
E++ + + ++ D ++I +
Sbjct: 152 EIRPVCKKFMQDPMEIYV 169
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 131
G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 10 GMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 47
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 46.0 bits (104), Expect = 2e-05
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 1/78 (1%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLD-MGFEPQIRKIIEQIRPDRQTLMWSATWPK 433
GR++ + +L+ + +LDE D+ML+ + +++I + D+Q +M+SAT K
Sbjct: 175 GRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSK 234
Query: 434 EVKKLAEDYLGDYIQINI 487
E++ + + ++ D ++I +
Sbjct: 235 EIRPVCKKFMQDPMEIYV 252
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPI-ALVLAPTRELAQQI 131
G GKT ++L + I P G + ALVL TRELA QI
Sbjct: 93 GMGKTAVFVLSTLQQIEPSP------GQVSALVLCHTRELAYQI 130
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 41.9 bits (94), Expect = 4e-04
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = +2
Query: 293 NLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI-RPDRQTLMWSATWPKEVKKLAEDYLGD 469
+L + YLVLDE+D++ + QI +++ P ++SAT P V++LA + D
Sbjct: 279 DLSKVEYLVLDESDKLFEQSLLKQIDCVVKACSNPSIIRSLFSATLPDSVEELARSIMHD 338
Query: 470 YIQINIGSLQLSAITTFFKL 529
+++ IG ++ T KL
Sbjct: 339 AVRVIIGRKNTASETVKQKL 358
Score = 34.7 bits (76), Expect = 0.057
Identities = 18/42 (42%), Positives = 25/42 (59%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 128
GSGKT A+I P ++ + DG A++L+P RELA Q
Sbjct: 188 GSGKTFAFICPMLIKLKRPST----DGIRAVILSPARELAAQ 225
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 40.7 bits (91), Expect = 9e-04
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 14/82 (17%)
Frame = +2
Query: 257 GRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQI--------------RP 394
GR+ + + G + C +LVLDE D +L F I +I+E + R
Sbjct: 252 GRIAEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRILEHVGKRSGAGPKGEVDERA 311
Query: 395 DRQTLMWSATWPKEVKKLAEDY 460
+RQT++ SAT P V + A+ +
Sbjct: 312 NRQTILVSATVPFSVIRAAKSW 333
Score = 33.1 bits (72), Expect = 0.17
Identities = 27/91 (29%), Positives = 41/91 (45%), Gaps = 9/91 (9%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGP--------IALVLAPTRELAQQI-QQVAADFG 155
GSGKTLAY+LP + I R A+++AP+REL QI ++V G
Sbjct: 157 GSGKTLAYLLPILSEIGPLAEKSRSSHSENDKRTEIQAMIVAPSRELGMQIVREVEKLLG 216
Query: 156 HTSYVRNTCVFGGAPKREQARDLERGVEIVI 248
+ GGA + Q L++ ++
Sbjct: 217 PVHRRMVQQLVGGANRMRQEEALKKNKPAIV 247
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPI-RRGDGPIALVLAPTRELAQQI 131
GSGKTLAY+LP + + + + ++ P A +L P+REL QQ+
Sbjct: 93 GSGKTLAYLLPLLQKLFSADSVSKKKLAPSAFILVPSRELCQQV 136
Score = 38.7 bits (86), Expect = 0.004
Identities = 22/58 (37%), Positives = 33/58 (56%)
Frame = +2
Query: 314 LVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQINI 487
LVLDEAD +L G+E +R + I Q L+ SAT +V+KL + L + I + +
Sbjct: 204 LVLDEADLLLSYGYEDNLRSVTSIIPRRCQCLLMSATTSSDVEKLKKLILHNPIVLTL 261
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 37.9 bits (84), Expect = 0.006
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHI--------------NNQPPIRRGDGPI-ALVLAPTRELAQQIQQ 137
GSGKTLA+ LP + + + DG + AL++ PTRELA Q+ +
Sbjct: 238 GSGKTLAFGLPILQRLLDEREKVGKLYALKGEEAQKYAADGYLRALIITPTRELALQVTE 297
Query: 138 VAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIAT 254
+ V+ + GG +Q R L+ EIV+AT
Sbjct: 298 HLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVAT 336
Score = 31.5 bits (68), Expect = 0.53
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 257 GRLIDFL---EKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIE 382
GRL + + EK L ++ VLDEADRM++ G +++ I++
Sbjct: 338 GRLWELMSAGEKHLVELHSLSFFVLDEADRMVERGHFRELQSILD 382
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 36.7 bits (81), Expect = 0.014
Identities = 23/46 (50%), Positives = 30/46 (65%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 140
GSGKTL+Y LP IV + P+R ALV+ PTR+LA Q++ V
Sbjct: 72 GSGKTLSYALP-IVQLLASRPVR---CLRALVVLPTRDLALQVKDV 113
Score = 31.5 bits (68), Expect = 0.53
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Frame = +2
Query: 257 GRLIDFLE--KGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSAT 424
GRL+D + KG T L+ YLV+DE DR+L ++ + +++ + +L S T
Sbjct: 174 GRLMDHINNTKGFT-LEHLRYLVVDETDRLLREAYQSWLPTVLQLTQTSDDSLFPSFT 230
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 34.3 bits (75), Expect = 0.076
Identities = 20/51 (39%), Positives = 28/51 (54%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAADFG 155
GSGKT ++L + ++ P +R P AL + PTRELA Q +V G
Sbjct: 141 GSGKTTCFVLGMLSRVD--PTLRE---PQALCICPTRELANQNMEVLQKMG 186
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.1 bits (72), Expect = 0.17
Identities = 20/47 (42%), Positives = 27/47 (57%)
Frame = +3
Query: 3 GSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 143
GSGKTL Y+L IN Q + A+++ PTREL Q+ +VA
Sbjct: 123 GSGKTLTYLLLIFSLINPQRSSVQ-----AVIVVPTRELGMQVTKVA 164
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 31.9 bits (69), Expect = 0.40
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = +2
Query: 302 RCT-YLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQ 478
RC Y+V DEAD +L F+ QI ++I +R D K+V +LA+ LG ++
Sbjct: 236 RCVKYVVFDEADMLLCGSFQNQIIRLINMLRFDE----------KQVSRLAKSNLGRPME 285
Query: 479 INIGSLQL 502
I+ Q+
Sbjct: 286 IDASVPQI 293
>At1g71390.1 68414.m08243 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5B
[Lycopersicon esculentum] gi|3894391|gb|AAC78595
Length = 784
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = -2
Query: 305 TAVSWLCPFPRNQLIYLSSNDYFYSPLQVPGL 210
T SWL P Q++ L SND FY PL P +
Sbjct: 496 TFPSWLGSLPSLQVLILRSND-FYGPLYHPSM 526
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 29.1 bits (62), Expect = 2.8
Identities = 13/69 (18%), Positives = 34/69 (49%)
Frame = +2
Query: 260 RLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEV 439
RL++ + ++ + LV+DE + G+ ++ I + I QT++++ ++ +
Sbjct: 256 RLLEIVTLKGVDISNVSLLVIDELGSLCSGGYLNAVKSIKQAISSKHQTIVFNNSFSASI 315
Query: 440 KKLAEDYLG 466
+ +LG
Sbjct: 316 IPAVQSFLG 324
>At5g62370.1 68418.m07828 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 982
Score = 28.7 bits (61), Expect = 3.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = +2
Query: 233 SRNSHCYSGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEP 361
SRN HCY+ + F +KG + + L++ RMLD G P
Sbjct: 375 SRNVHCYTNLIFGFYKKG--GMDKAVDLLM----RMLDNGIVP 411
>At4g13920.1 68417.m02154 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 891
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 305 TAVSWLCPFPRNQLIYLSSNDYFYSPLQVPG-LLSF 201
T SWL P QL+ L SN+ F+ P+ PG LSF
Sbjct: 607 TFPSWLKSLPNLQLLVLRSNE-FHGPIFSPGDSLSF 641
>At4g13810.1 68417.m02140 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 741
Score = 28.3 bits (60), Expect = 5.0
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -2
Query: 305 TAVSWLCPFPRNQLIYLSSNDYFYSPLQVPG-LLSF 201
T SWL P Q++ L SN+ FY P+ PG LSF
Sbjct: 457 TFPSWLELLPNLQILVLRSNE-FYGPIFSPGDSLSF 491
>At3g60970.1 68416.m06823 ABC transporter family protein ABC
transporter-like proteins
Length = 1037
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 284 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 400
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 934 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 972
>At3g60160.1 68416.m06717 ABC transporter family protein similar to
ATP-binding cassette transporter MRP8 GI:18031899 from
[Arabidopsis thaliana]
Length = 1490
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 284 GTTNLQRCTYLVLDEADRMLDMGFEPQIRKIIEQIRPDR 400
G L++ LVLDEA +D + I+KII Q DR
Sbjct: 1387 GRVLLKKSNILVLDEATASVDSATDGVIQKIINQEFKDR 1425
>At3g04670.1 68416.m00500 WRKY family transcription factor similar
to elicitor response element binding protein WRKY3
isolog GB:AAB63078 [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 130 ICCANSLVGAKTKAIGPSPLRI 65
ICC N L G T+ + P PL++
Sbjct: 79 ICCGNDLSGDYTQVLAPEPLQM 100
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 335 RMLDMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 469
++L MG+ + ++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 149 QLLLMGWV-ESKRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At5g27300.1 68418.m03260 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587; contains Pfam profile PF01535: PPR
repeat
Length = 510
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 254 SGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 367
+GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 307 NGRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 344
>At2g27800.1 68415.m03370 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 427
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +2
Query: 254 SGRLIDFLEKGTTNLQRCTYLVLDEADRMLDMGFEPQI 367
+GR++DF+ T + C DEA R+L+M E Q+
Sbjct: 373 NGRVVDFISYRTLVDESCRKGKYDEATRLLEMLREKQL 410
>At2g33670.1 68415.m04126 seven transmembrane MLO family protein /
MLO-like protein 5 (MLO5) identical to MLO-like protein
5 (AtMlo5) [Arabidopsis thaliana] SWISS-PROT:O22815;
similar to MLO protein SWISS-PROT:P93766,
NCBI_gi:1877221 [Hordeum vulgare][Barley]
Length = 501
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 613 LHQVLDFVQFLAIIHLIY 560
LHQV F+ FLA+ H+IY
Sbjct: 147 LHQVHIFIFFLAVFHVIY 164
>At1g42560.1 68414.m04907 seven transmembrane MLO family protein /
MLO-like protein 9 (MLO9) nearly identical to membrane
protein Mlo9 [Arabidopsis thaliana] GI:14091588; similar
to MLO protein SWISS-PROT:P93766, NCBI_gi:1877221
[Hordeum vulgare][Barley]
Length = 467
Score = 27.5 bits (58), Expect = 8.7
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 613 LHQVLDFVQFLAIIHLIY 560
LHQV F+ FLA+ H+IY
Sbjct: 154 LHQVHIFIFFLAVFHVIY 171
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,197,439
Number of Sequences: 28952
Number of extensions: 318990
Number of successful extensions: 1098
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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