Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120007.Seq
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10) 36 0.039
SB_39686| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=3.6) 33 0.16
SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.36
SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.48
SB_34278| Best HMM Match : DUF1605 (HMM E-Value=3.6) 31 0.63
SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083) 31 0.63
SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15) 31 1.1
SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_31084| Best HMM Match : Collagen (HMM E-Value=9.8) 30 1.5
SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45) 30 1.5
SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24) 29 2.5
SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11) 29 2.5
SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0) 29 2.5
SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1) 29 3.4
SB_45236| Best HMM Match : PRP38 (HMM E-Value=0) 29 3.4
SB_17584| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.4
SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1) 24 5.3
SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26) 28 5.9
SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26) 28 5.9
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 28 5.9
SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_32623| Best HMM Match : UCR_hinge (HMM E-Value=5.7) 28 7.7
SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22) 28 7.7
SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47) 28 7.7
>SB_55789| Best HMM Match : ERG2_Sigma1R (HMM E-Value=3.6e-10)
Length = 192
Score = 35.5 bits (78), Expect = 0.039
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +3
Query: 21 FGTVLGIAGSTINNHLKMAEFRDMMEQQMARSASVLYTIAGGGTASRADITEAMKTEFAY 200
FGT +G G T H F + +Q+A A + + GG T+SRA T A++ +FA
Sbjct: 36 FGTPIGTEGHT-GRHTADDYFHILQGEQLAFRAGIEFLQPGGSTSSRAAAT-AVELQFAL 93
Query: 201 QEQLAQNLKLM 233
E +L ++
Sbjct: 94 YESYYNSLAVV 104
>SB_39686| Best HMM Match : ETC_C1_NDUFA4 (HMM E-Value=3.6)
Length = 656
Score = 33.5 bits (73), Expect = 0.16
Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +2
Query: 14 LDFWHGARYSRFDDKQSPEDGRVQGHDGAADGPERERP-VH-----HRGGRDRQPGRHHG 175
LD H R R D++S GR+QG G R P VH + GGR G+H
Sbjct: 328 LDRGHATRQFREKDERS---GRLQGIGAGQGGAARHEPGVHGSDGFYEGGRQHYDGQHGK 384
Query: 176 GDEDR 190
+EDR
Sbjct: 385 DEEDR 389
>SB_16504| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 252
Score = 32.3 bits (70), Expect = 0.36
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 3/57 (5%)
Frame = +2
Query: 35 RYSRFDDKQSPE---DGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVR 196
RY +D++ E D R + G D ER+R RG RDR+ R D DR R
Sbjct: 121 RYEDREDRERGERDRDRRRERDRGERDRGERDRGERDRGERDRRRDRDRDRDRDRDR 177
>SB_42841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 31.9 bits (69), Expect = 0.48
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +2
Query: 245 KSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKALSVVHQDLDEA 424
KS+F Q +LI + +Q + TQ+ DLK T S + A L+ V Q+L A
Sbjct: 193 KSTFHNQRNLINTVSSQVTRISTQLADLKTSANTMLASYSFVTRNFAPELTRVDQELSSA 252
Query: 425 DK 430
++
Sbjct: 253 NE 254
>SB_34278| Best HMM Match : DUF1605 (HMM E-Value=3.6)
Length = 243
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/79 (30%), Positives = 30/79 (37%)
Frame = +2
Query: 35 RYSRFDDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTS 214
R R D+ D R + D D ER+R R DR R D DR R S
Sbjct: 80 RDRRDRDRDRDRDRRDRDRDKERDRRERDRRDRDRRRSDRDSDRDRRRDRDRGRSSRDAS 139
Query: 215 PKFEVDAGEYKSSFSKQTS 271
P E G+ S ++S
Sbjct: 140 PDREERKGDKDKSRRSRSS 158
>SB_31| Best HMM Match : Myosin_tail_1 (HMM E-Value=0.083)
Length = 902
Score = 31.5 bits (68), Expect = 0.63
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +2
Query: 86 GHDGAADGPERERPVHHRGGRDRQPGRHHGG 178
G A P + P H GRD P +HH G
Sbjct: 7 GKPAQASSPRDQSPSKHHPGRDTSPSKHHPG 37
>SB_20899| Best HMM Match : RRM_1 (HMM E-Value=2.3e-15)
Length = 876
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/47 (38%), Positives = 20/47 (42%)
Frame = +2
Query: 26 HGARYSRFDDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGR 166
HG R D+ SP R +G G D P R H R GR P R
Sbjct: 159 HGRGRGRGRDRLSPPPHRDRGRPGYDDRPPRFDHPHERYGRPLSPPR 205
>SB_31097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 883
Score = 30.7 bits (66), Expect = 1.1
Identities = 19/38 (50%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -3
Query: 494 CRCLLGFDLVPATPWPVPGRG--PCQPRRDLGARLRGP 387
CR G LV AT P P R P QP +DL A L GP
Sbjct: 707 CRACHGCQLVGATNPPEPLRHTVPTQPWKDLAADLMGP 744
>SB_31084| Best HMM Match : Collagen (HMM E-Value=9.8)
Length = 80
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/51 (39%), Positives = 22/51 (43%)
Frame = +2
Query: 95 GAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPKFEVDAGEYK 247
G DG ERE R GR+ GR GDE + G E D GE K
Sbjct: 20 GEEDGDEREMGTRGRWGREGNGGREADGDER--DMGGERKMGGEGDGGEIK 68
>SB_48451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2851
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/115 (22%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +2
Query: 59 QSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPG----TTSPKFE 226
+S DGR G G D R P ++ G H ++ +V G TT PK
Sbjct: 1431 RSTSDGRHAGQKGPRDDSSRSGPRRDNQRNTQKKGDHFLAEKQQVTADGSKASTTEPKGA 1490
Query: 227 VDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKA 391
+ A + + TS + N++ + + + + A+++S + D + KA
Sbjct: 1491 LPAAK---TGDASTSKLAGGQNRQEMKGNEFIAVDSIGSDAAKASKRPDQAVKKA 1542
>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
Length = 4160
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Frame = +2
Query: 305 VETQMKDLKRLIVTASQSSAKSDAEIAKALSVVHQDLDEADK-DRDLEPAK 454
VET++++ ++ + T + KS+ E+AKA + DE + + +L AK
Sbjct: 1752 VETELQNARKRLATLETTERKSEEELAKANHEIQVSKDEISRLETELNAAK 1802
>SB_22778| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 620
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +2
Query: 233 AGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKS-DAEIAKALSVVHQ 409
A EY+ +K S + + + V+ ++KDL ++ Q +A++ E V+
Sbjct: 279 AEEYRQRATKTRSELMELEVERDAVQQEIKDLSTMLQRQKQDTAEAVQVERKNERKVMEL 338
Query: 410 DLDEADKDRDLEPAKVSLE 466
L+ R++E +K LE
Sbjct: 339 TLERDKLLREMESSKTRLE 357
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 29.9 bits (64), Expect = 1.9
Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Frame = +2
Query: 26 HGARYSRFDDKQSPEDGRVQGHDGAADGPERERP--VHHRGGRDRQPGRHHGGDEDRVRL 199
HG F SP +G GH DG E ++P + + R R+ E + +
Sbjct: 859 HGNSDVSFSGHSSPREGNSSGHSSPRDGMEVDKPATLKRQSSRQRETCSKVKKLEAKSKT 918
Query: 200 P----GTTSPKFEVDAGEYKSSFSKQTSLIEHM--HNQEHLVETQMKDL 328
P G +F+V +K K E + + + ++ET+ DL
Sbjct: 919 PDCPEGYCWSQFQVGLCSFKFCRLKHFPTTEELQKYKETRVLETESADL 967
>SB_32600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1572
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/137 (21%), Positives = 48/137 (35%), Gaps = 1/137 (0%)
Frame = +2
Query: 59 QSPEDGRVQGHDGAADGPERERPVHH-RGGRDRQPGRHHGGDEDRVRLPGTTSPKFEVDA 235
++P+D RV G D A R R G R + +ED T +
Sbjct: 1404 ETPDD-RVDGKDNIASKQNSHRTTTRGRAGWGRPVAQAQSTEEDIAGSDPETPLRRARAT 1462
Query: 236 GEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKALSVVHQDL 415
K + Q S+++H ET KR+ +A + AK + V L
Sbjct: 1463 RNQKQRDASQDSILDHAEEIHERPETTKLRQKRMHTSAEPADAKRSTKRTSRQGPVESSL 1522
Query: 416 DEADKDRDLEPAKVSLE 466
E+ + + + +E
Sbjct: 1523 GESSELEGTDTIEADVE 1539
>SB_58150| Best HMM Match : ig (HMM E-Value=3.7e-24)
Length = 456
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -3
Query: 542 LTLPRMLPNIIGSTLLCRCLLGFDLVPATPWPVPGRGP 429
+T+ L ++ +T+ RC D P T W PG P
Sbjct: 247 MTIGTNLTTLVNTTITIRCQASGDPAPDTAWQRPGNKP 284
>SB_34920| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 29.5 bits (63), Expect = 2.5
Identities = 24/105 (22%), Positives = 44/105 (41%)
Frame = +2
Query: 50 DDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPKFEV 229
DD+ +P+ R + H G+ + E+ R G+D + + G S +
Sbjct: 3 DDEDAPQAKRQRIHFGSLEEVEKNRLASQTTGKDGKEMDEVDRIISNAIMEGIQSGNINI 62
Query: 230 DAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSA 364
GEY S+ T+ H QE L + + + R+I + ++A
Sbjct: 63 SEGEY-LELSEDTTSERH---QELLEQFERRKKARMITVPTDNAA 103
>SB_1305| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.8e-11)
Length = 1491
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/63 (23%), Positives = 35/63 (55%)
Frame = +2
Query: 221 FEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKALSV 400
+E+ ++KSSFS+Q S +E E +T++++L + +++ + E+ +AL +
Sbjct: 318 YEIQILDFKSSFSEQISTLEAALQHEQEQKTRLEELNISLRGDNEAILREVDEMKRALLL 377
Query: 401 VHQ 409
+
Sbjct: 378 AQE 380
>SB_11152| Best HMM Match : Myosin_head (HMM E-Value=0)
Length = 1997
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/83 (24%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Frame = +2
Query: 218 KFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIV-------TASQSSAKSD- 373
KFE D E + + + + ++ Q+KDL+ ++ A +S+A+++
Sbjct: 1653 KFETDCNEMEINLENSMKANQELQKTTKKLQQQVKDLQLMVEEEQRGRDDARESAARAER 1712
Query: 374 --AEIAKALSVVHQDLDEADKDR 436
AE+A L + L++AD+ R
Sbjct: 1713 RSAELAAELEDLRNQLEQADRAR 1735
>SB_6936| Best HMM Match : TP2 (HMM E-Value=1.1)
Length = 256
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 62 SPEDGRVQGHDGAADG--PERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPK 220
SP+ + + ++DG P+R+RP HR R R + D+ LP + +PK
Sbjct: 136 SPDSHKSRSESPSSDGESPDRQRPSPHRRSRPRN-RKDRQLDKKTKTLPNSYAPK 189
>SB_45236| Best HMM Match : PRP38 (HMM E-Value=0)
Length = 381
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +2
Query: 41 SRFDDKQSPEDGRVQGHDGAADGP-ERERPVHHRGGRDRQPGRHHGGDEDRVR 196
SR D S + R + D D P + ER + RDR R H D DR R
Sbjct: 259 SRSRDHSSRRNSRDKSRDPDRDRPRDSERDRYRDIERDRHRDRRHSRDRDRKR 311
>SB_17584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/48 (33%), Positives = 28/48 (58%)
Frame = +3
Query: 90 MMEQQMARSASVLYTIAGGGTASRADITEAMKTEFAYQEQLAQNLKLM 233
M E ++A +S+ + GG T+SRA T A++ +FA E +L ++
Sbjct: 52 MSEAEIAEISSIEFLQPGGSTSSRAAAT-AVELQFALYESYYNSLAVV 98
>SB_49054| Best HMM Match : Chordopox_A30L (HMM E-Value=4.1)
Length = 432
Score = 24.2 bits (50), Expect(2) = 5.3
Identities = 13/49 (26%), Positives = 22/49 (44%)
Frame = +2
Query: 50 DDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVR 196
DD + D R + G+++ R G +DR R GD++R +
Sbjct: 40 DDSRRRRDDRGEIASGSSEPDPRREKRRREGDKDRVKDRER-GDKERTK 87
Score = 22.6 bits (46), Expect(2) = 5.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 311 TQMKDLKRLIVTASQSSAKSDAEIAKALSVVHQDLDEADKDR 436
T+ KD R T + + D E K S +QD + D+DR
Sbjct: 104 TRDKDRGRHEKTDKGRNGEGDREKRKERSDRNQDYERKDRDR 145
>SB_44671| Best HMM Match : 7tm_1 (HMM E-Value=1.7e-26)
Length = 298
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/21 (52%), Positives = 17/21 (80%)
Frame = -3
Query: 542 LTLPRMLPNIIGSTLLCRCLL 480
LTL +LPN+IG+TL+C ++
Sbjct: 23 LTLVLVLPNLIGNTLVCLTII 43
>SB_44669| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-26)
Length = 308
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = -3
Query: 542 LTLPRMLPNIIGSTLLC 492
LTL +LPN+IG+TL+C
Sbjct: 23 LTLALVLPNLIGNTLVC 39
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Frame = +2
Query: 77 RVQGHDGAADGPERERPVHHRGGRDRQP-----GRHHGGDEDR 190
R++ H G+ P H GG D +P RHHGG + +
Sbjct: 604 RIKHHGGSHSKPYCGNRFKHHGGSDSKPYCGNRFRHHGGSDSK 646
>SB_23024| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 180 MKTEFAYQEQLAQNLKLMQENINHLSASKLPLSNTC 287
M E Y E L LK +Q N H + S ++N C
Sbjct: 95 MDAEXIYSEALMDELKKLQVNRPHYTTSNQDMNNDC 130
>SB_50721| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1057
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/54 (31%), Positives = 24/54 (44%)
Frame = +2
Query: 209 TSPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKS 370
T PKF D G S + + H L ET+ DL R I T+ + + K+
Sbjct: 243 TYPKFGYDDGFDHSPRKRSLNKGNHTEVSRQLKETEDSDLTRAIQTSLEDTKKA 296
>SB_45038| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 561
Score = 27.9 bits (59), Expect = 7.7
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +2
Query: 113 ERERPVHHRGGRD-RQPGRHHGGDEDRVRLPGTTSPKFEVDAGEYKSSFSKQTSLIEHMH 289
E ER H R RD + + + +D + + TSP+ + + + S+ S +TSL++ +
Sbjct: 99 EAERLNHQRVLRDYSRLEQRYQNLQDELEIV-QTSPQKPLRSLDSVSTASSETSLVDALE 157
Query: 290 NQEHLVETQMKDLKRLIVTASQ 355
+ E + D R I+T SQ
Sbjct: 158 KELREQEAEEPDEVRSIITKSQ 179
>SB_32623| Best HMM Match : UCR_hinge (HMM E-Value=5.7)
Length = 124
Score = 27.9 bits (59), Expect = 7.7
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +2
Query: 152 RQPGRHHGGDEDRVRLPGTTSPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLK 331
RQPGRH + G + ++ + + L+E + NQ +E M++ K
Sbjct: 18 RQPGRHFSAG---YHVFGHVTSSYDAKYSQMTYGDHYRKKLVEDIENQREHLEQIMREQK 74
Query: 332 RLIVTASQSSAKS 370
RL S+ K+
Sbjct: 75 RLAEAKRVSALKA 87
>SB_51928| Best HMM Match : HEAT (HMM E-Value=4.9e-22)
Length = 1115
Score = 27.9 bits (59), Expect = 7.7
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Frame = +2
Query: 32 ARYSRFDDKQSPEDGRVQGHD--GAADGPERERPVHHRGGRDRQPG--RHHGGDEDRVRL 199
AR +R+D+ E G GH G A+ P +R G PG R DE
Sbjct: 157 ARRNRWDETPKTERGETPGHSTPGWAETPRTDRMGAETPGATPTPGSKRRSRWDETPASQ 216
Query: 200 PGTTSP 217
G T+P
Sbjct: 217 MGGTTP 222
>SB_28381| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 27.9 bits (59), Expect = 7.7
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +3
Query: 48 STINNHLKMAEFRDMMEQQMARSASVLYTIAGGGTASRADITEAMKTEFAYQEQLAQNLK 227
+ +++L + R ++E + S+ + GG T+SRA T A++ +FA E +L
Sbjct: 45 NAFSSNLPERDVRQVLEDGDLKRRSIEFLQPGGSTSSRAAAT-AVELQFALYESYYNSLA 103
Query: 228 LM 233
++
Sbjct: 104 VV 105
>SB_891| Best HMM Match : DUF1098 (HMM E-Value=0.47)
Length = 715
Score = 27.9 bits (59), Expect = 7.7
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 4/101 (3%)
Frame = +3
Query: 6 IVASIFGTVLGIAGSTINNHLKMAEFRDMMEQQMARSA--SVLYTIAGGGTA--SRADIT 173
++ + VLG + +L + +F QQ A + + +IA G A S+ D T
Sbjct: 350 LITMLPANVLGAGSTGQPGNLGIQQFNATGSQQDATAPLRGLGKSIAQGQVANPSQKDAT 409
Query: 174 EAMKTEFAYQEQLAQNLKLMQENINHLSASKLPLSNTCTIR 296
+M+ Q +L N +QEN + A+ PLSN ++
Sbjct: 410 -SMQLPGVPQMKLFDNSSALQENATNSQAATSPLSNELQVQ 449
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,986,035
Number of Sequences: 59808
Number of extensions: 428848
Number of successful extensions: 1558
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 1354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1693527500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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