Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120007.Seq
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g26150.1 68418.m03110 protein kinase family protein contains ... 34 0.096
At5g12000.1 68418.m01403 protein kinase family protein contains ... 34 0.096
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 33 0.17
At2g17540.2 68415.m02030 expressed protein 31 0.51
At2g17540.1 68415.m02029 expressed protein 31 0.51
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 31 0.90
At2g07020.1 68415.m00803 protein kinase family protein contains ... 29 2.7
At1g16760.1 68414.m02013 protein kinase family protein contains ... 29 2.7
At2g30940.2 68415.m03773 protein kinase family protein contains ... 29 3.6
At2g30940.1 68415.m03772 protein kinase family protein contains ... 29 3.6
At1g78940.1 68414.m09203 protein kinase family protein contains ... 29 3.6
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim... 28 4.8
At4g31230.1 68417.m04433 protein kinase family protein contains ... 28 4.8
At3g20200.1 68416.m02560 protein kinase family protein contains ... 28 6.3
At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding protei... 28 6.3
At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE) i... 28 6.3
At1g80000.2 68414.m09359 expressed protein identical to unknown ... 28 6.3
At1g80000.1 68414.m09358 expressed protein identical to unknown ... 28 6.3
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai... 27 8.4
At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing ... 27 8.4
At3g01900.1 68416.m00137 cytochrome P450 family protein similar ... 27 8.4
>At5g26150.1 68418.m03110 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 33.9 bits (74), Expect = 0.096
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AEIA ALS +HQ E RDL+PA + L+ N +
Sbjct: 523 AEIATALSFLHQAKPEPLVHRDLKPANILLDKNYV 557
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 33.9 bits (74), Expect = 0.096
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AEIA ALS +HQ E RDL+PA + L+ N +
Sbjct: 523 AEIATALSFLHQAKPEPLVHRDLKPANILLDKNYV 557
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 33.1 bits (72), Expect = 0.17
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Frame = +2
Query: 35 RYSRFDDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPG-RHHGGDEDRVRLP 202
RYS DD+ S +D R DG +R GGR R G R G E R P
Sbjct: 179 RYSSKDDRYSSKDDRYGSRDGGGSRYGPDRSGERAGGRSRDGGSRGAPGGERHSRAP 235
>At2g17540.2 68415.m02030 expressed protein
Length = 275
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 212 SPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKA 391
SP F + +S S + H H+ +HL+ Q + + L AS+++A ++AKA
Sbjct: 36 SPPFASSSSSTTTSNGSSASAVVHTHHLDHLLNDQTRSPEEL-AQASKATAALAVKVAKA 94
>At2g17540.1 68415.m02029 expressed protein
Length = 275
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 212 SPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSAKSDAEIAKA 391
SP F + +S S + H H+ +HL+ Q + + L AS+++A ++AKA
Sbjct: 36 SPPFASSSSSTTTSNGSSASAVVHTHHLDHLLNDQTRSPEEL-AQASKATAALAVKVAKA 94
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 30.7 bits (66), Expect = 0.90
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Frame = +2
Query: 218 KFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSSA--KSDAEIA-K 388
K E A S KQ +E +++ H ET++ DLK IVT + A K D E++ +
Sbjct: 338 KLERSASVSLESVMKQ---LEGSNDKLHDTETEITDLKERIVTLETTVAKQKEDLEVSEQ 394
Query: 389 ALSVVHQDLDEADKDRDLEPAKVSLE 466
L V +++ + +K ++E K LE
Sbjct: 395 RLGSVEEEVSKNEK--EVEKLKSELE 418
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AEIA +L+ +HQ E RDL+PA + L+ + +
Sbjct: 520 AEIATSLNFLHQLKPEPLVHRDLKPANILLDQHMV 554
>At1g16760.1 68414.m02013 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 758
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AEIA L +HQ E RDL+P V L+ N +
Sbjct: 551 AEIATGLLFLHQTKPEPIVHRDLKPGNVLLDHNYV 585
>At2g30940.2 68415.m03773 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 447
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 380 IAKALSVVHQDLDEADKDRDLEPAKVSLE 466
+AK L+ +H+D++ +D+ P+K+ L+
Sbjct: 274 VAKGLAYIHEDIEPKITHQDIRPSKILLD 302
>At2g30940.1 68415.m03772 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 445
Score = 28.7 bits (61), Expect = 3.6
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +2
Query: 380 IAKALSVVHQDLDEADKDRDLEPAKVSLE 466
+AK L+ +H+D++ +D+ P+K+ L+
Sbjct: 274 VAKGLAYIHEDIEPKITHQDIRPSKILLD 302
>At1g78940.1 68414.m09203 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 680
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AEIA L +HQ E RDL+P V L+ N +
Sbjct: 478 AEIATGLLFLHQTKPEPIVHRDLKPGNVLLDYNYV 512
>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
similar to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702); identical to cDNA
putative zinc finger protein SHI (SHI) GI:4929802
Length = 331
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 212 SPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRL 337
+P D GE S+ L +H +NQE + + Q + +RL
Sbjct: 39 NPNSNADGGEAGPSYKGTLELWQHPNNQEIIFQQQQQQQQRL 80
>At4g31230.1 68417.m04433 protein kinase family protein contains
Pfam profiles PF00069: Protein kinase domain, PF00582:
universal stress protein family
Length = 764
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 353 QSSAKSDAEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI--LTGIGI 496
Q+ + AEI L +HQ E RDL+PA + L+ N + L +G+
Sbjct: 561 QTRFRIAAEIGTVLLFLHQTKPEPLVHRDLKPANILLDRNFVSKLADVGL 610
>At3g20200.1 68416.m02560 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 780
Score = 27.9 bits (59), Expect = 6.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 374 AEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQI 478
AE+A L +HQ E RDL+P + ++ N +
Sbjct: 554 AEVATGLLFLHQTKPEPIVHRDLKPGNILIDQNYV 588
>At3g16000.1 68416.m02024 matrix-localized MAR DNA-binding
protein-related similar to matrix-localized MAR DNA
binding protein MFP1 GI:1771158 from [Lycopersicon
esculentum]
Length = 726
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/95 (21%), Positives = 45/95 (47%)
Frame = +2
Query: 182 EDRVRLPGTTSPKFEVDAGEYKSSFSKQTSLIEHMHNQEHLVETQMKDLKRLIVTASQSS 361
+D++ + K D ++ ++ L+E + ++ +L+ ++KD + + S
Sbjct: 233 KDQIESLENSLSKAGEDKEALETKLREKLDLVEGLQDRINLLSLELKDSEEKAQRFNASL 292
Query: 362 AKSDAEIAKALSVVHQDLDEADKDRDLEPAKVSLE 466
AK +AE+ + S+ Q RDL AK+ ++
Sbjct: 293 AKKEAELKELNSIYTQ------TSRDLAEAKLEIK 321
>At2g27100.1 68415.m03256 C2H2 zinc-finger protein SERRATE (SE)
identical to C2H2 zinc-finger protein SERRATE
GI:14486602 from [Arabidopsis thaliana]
Length = 720
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +2
Query: 56 KQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDR 190
++SP R + D DG R P G DR+ G HGG DR
Sbjct: 107 RRSPPQKRYRRDDNGYDG-RRGSPRGGYGPPDRRFGYDHGGGYDR 150
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 35 RYSRFDDKQSPEDGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHG-GDE 184
RY R D+ DGR G P+R H GG DR+ G G GDE
Sbjct: 114 RYRRDDNGY---DGRRGSPRGGYGPPDRRFGYDHGGGYDREMGGRPGYGDE 161
>At1g80000.2 68414.m09359 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 71 DGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPKF 223
D R GHD + +++ R R R GR G +DR + G S +F
Sbjct: 169 DERKWGHDKFEEMNTQKQQYDRRTSRGRGRGRGQGRGQDRGQSRGNNSKEF 219
>At1g80000.1 68414.m09358 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 71 DGRVQGHDGAADGPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPKF 223
D R GHD + +++ R R R GR G +DR + G S +F
Sbjct: 169 DERKWGHDKFEEMNTQKQQYDRRTSRGRGRGRGQGRGQDRGQSRGNNSKEF 219
>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
PF03109: ABC1 family
Length = 1009
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 132 TIAGGGTASRADITEAMKTEFAYQEQLAQNLKLMQENI 245
++AG S +EAMKT +Q QN+K++QE +
Sbjct: 407 SVAGLFFRSSTPSSEAMKTFKTLNDQRVQNMKVIQEKM 444
>At5g19960.1 68418.m02376 RNA recognition motif (RRM)-containing
protein low similarity to glycine-rich RNA-binding
protein [Euphorbia esula] GI:2645699; contains
INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA
recognition motif) (RRM) domain
Length = 337
Score = 27.5 bits (58), Expect = 8.4
Identities = 19/73 (26%), Positives = 29/73 (39%)
Frame = +2
Query: 107 GPERERPVHHRGGRDRQPGRHHGGDEDRVRLPGTTSPKFEVDAGEYKSSFSKQTSLIEHM 286
GP R +P GG DR P R G+ +R R + + + ++ EH
Sbjct: 92 GPGRLQP---HGGWDRSPDRRSDGNYERDRYSDRSRERDRSQDRRKDHRYIEKERAYEHS 148
Query: 287 HNQEHLVETQMKD 325
H+ E + M D
Sbjct: 149 HDFERRNDHDMVD 161
>At3g01900.1 68416.m00137 cytochrome P450 family protein similar to
Cytochrome P450 94A1 (P450-dependent fatty acid
omega-hydroxylase) (SP:O81117) {Vicia sativa}; contains
Pfam profile: PF00067 cytochrome P450
Length = 496
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 368 SDAEIAKALSVVHQDLDEADKDRDLEPAKVSLEPNQILTG 487
S+ E+ KA+ VH +DE +D+ +PA I+ G
Sbjct: 236 SEKELRKAVGEVHNCVDEIIRDKKRKPANQDFLSRLIVAG 275
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,832,494
Number of Sequences: 28952
Number of extensions: 291802
Number of successful extensions: 1120
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1115
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1383534864
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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