Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120006.Seq
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein L11|S... 142 5e-35
SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein L11|Schizosac... 142 5e-35
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma... 28 0.94
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 28 0.94
SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomy... 26 5.0
SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|ch... 25 6.6
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 25 6.6
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 8.8
>SPAC26A3.07c |rpl1101|rpl11-1, rpl11|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 174
Score = 142 bits (343), Expect = 5e-35
Identities = 64/94 (68%), Positives = 76/94 (80%)
Frame = +1
Query: 226 KDCCPLYSPRAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 405
K C + KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 406 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507
G+DFYVV+ RPG VA R+ + G+VG+ H++ E
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAE 157
Score = 110 bits (264), Expect = 2e-25
Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Frame = +2
Query: 44 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 223
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 224 EKIAVHCTVRELKQKKSL-RGV 286
EKIA H TVR K ++ L RG+
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84
>SPBC17G9.10 |rpl1102|rpl11-2|60S ribosomal protein
L11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 142 bits (343), Expect = 5e-35
Identities = 64/94 (68%), Positives = 76/94 (80%)
Frame = +1
Query: 226 KDCCPLYSPRAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIY 405
K C + KAEEILERGLKV+EYEL++ NFSATGNFGFGIQEHIDLGIKYDPSIGIY
Sbjct: 64 KIACHVTVRGPKAEEILERGLKVKEYELKKRNFSATGNFGFGIQEHIDLGIKYDPSIGIY 123
Query: 406 GLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507
G+DFYVV+ RPG VA R+ + G+VG+ H++ E
Sbjct: 124 GMDFYVVMDRPGMRVARRKAQRGRVGYTHKINAE 157
Score = 110 bits (264), Expect = 2e-25
Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Frame = +2
Query: 44 DNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRN 223
+ ++N M+ L I KL LNI +GESGDRLTRAAKVLEQL+GQ PVFSKARYT+R FGIRRN
Sbjct: 3 EKAQNPMKELRISKLVLNISLGESGDRLTRAAKVLEQLSGQTPVFSKARYTIRRFGIRRN 62
Query: 224 EKIAVHCTVRELKQKKSL-RGV 286
EKIA H TVR K ++ L RG+
Sbjct: 63 EKIACHVTVRGPKAEEILERGL 84
>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 387
Score = 28.3 bits (60), Expect = 0.94
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = -1
Query: 290 FKPLSRISSALALGLYNGQQSFHYDGYQKTALYT*PWKIQAVVL*VAPTPWRHESA 123
F + IS A L+ + G +Y W I A +L V P PWR+ S+
Sbjct: 96 FAAILSISWATGFILFLKKTQGDIGGLYSHPIYPLLWVITAFILIVFPFPWRYRSS 151
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 28.3 bits (60), Expect = 0.94
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 282 PLKDFFCFSSRTVQWTAIFSLRRIPKDR 199
PL D + F T+ WT + S+ R P R
Sbjct: 271 PLSDLWLFDLETLSWTEVRSIGRFPGPR 298
>SPBC1734.15 |rsc4|brd1|RSC complex subunit Rsc4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 542
Score = 25.8 bits (54), Expect = 5.0
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -3
Query: 285 TPLKDFFCFSSRTVQWTAIFSLRRIPKDRTVYLALENTGCCPVS 154
TP+ DF FS ++V + F++ P+ + + + NT C +S
Sbjct: 353 TPVPDFLNFSHKSVMGRSTFNMPNFPEPK-FFEDIPNTERCILS 395
>SPAC24C9.06c |||aconitate hydratase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 778
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = +2
Query: 74 HIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
H++ + N +G A K+ +QLTG+ R GIR
Sbjct: 604 HLQNISNNYMIGAINAENGEANKLKDQLTGEYKTVPNVAIDYRDHGIR 651
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 358 LEYRSQNYPWRRSCHAAIHIL*LSNPSQGFLLL*LSDCTMDSNLFITTDTKRPH 197
LE R +NY W+R IHI+ L + +L T+++ + + RP+
Sbjct: 33 LEVRMENYVWKRRSD-GIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPY 85
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +3
Query: 393 NWNLWTGLLRRTWPARFQRSTQK 461
NW+ L R WP F RS+Q+
Sbjct: 644 NWSSIGRLRRSEWPRSFNRSSQQ 666
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,397,109
Number of Sequences: 5004
Number of extensions: 52046
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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