Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120006.Seq
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0409 - 20503480-20503678,20504522-20504717,20504805-205048... 128 3e-30
01_01_0745 + 5769150-5769152,5769268-5769375,5769812-5769854,576... 128 3e-30
05_02_0095 + 6564703-6564705,6564848-6564955,6565153-6565195,656... 111 4e-25
02_02_0195 + 7676014-7676094,7676111-7676218,7676307-7676349,767... 111 6e-25
02_02_0196 + 7685933-7685961,7686086-7686284 64 8e-11
01_01_0582 - 4317216-4317731 28 5.2
>06_03_0409 -
20503480-20503678,20504522-20504717,20504805-20504847,
20505632-20505739,20505848-20505850
Length = 182
Score = 128 bits (309), Expect = 3e-30
Identities = 60/83 (72%), Positives = 67/83 (80%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TKE
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKE 159
Score = 111 bits (267), Expect = 4e-25
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>01_01_0745 +
5769150-5769152,5769268-5769375,5769812-5769854,
5769945-5770140,5770836-5771034
Length = 182
Score = 128 bits (309), Expect = 3e-30
Identities = 60/83 (72%), Positives = 67/83 (80%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL R
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERA 136
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TKE
Sbjct: 137 GYRVARRRRCKSRVGIQHRVTKE 159
Score = 111 bits (266), Expect = 6e-25
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQANPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 151 GIQHRVTKEDAMKWFQVKYEG 171
>05_02_0095 +
6564703-6564705,6564848-6564955,6565153-6565195,
6565303-6565409,6566310-6566395,6566396-6566594
Length = 181
Score = 111 bits (267), Expect = 4e-25
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 64.9 bits (151), Expect = 5e-11
Identities = 28/43 (65%), Positives = 33/43 (76%)
Frame = +1
Query: 379 KYDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507
+YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKE
Sbjct: 116 RYDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 158
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 150 GIQHRVTKEDAMKWFQVKYEG 170
>02_02_0195 +
7676014-7676094,7676111-7676218,7676307-7676349,
7676449-7676648
Length = 143
Score = 111 bits (266), Expect = 6e-25
Identities = 56/80 (70%), Positives = 63/80 (78%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR + ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 29 SEKKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 88
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 89 RNEKIACYVTVRGEKAMQLL 108
Score = 68.1 bits (159), Expect = 5e-12
Identities = 32/41 (78%), Positives = 35/41 (85%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIK 381
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIK
Sbjct: 103 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 143
>02_02_0196 + 7685933-7685961,7686086-7686284
Length = 75
Score = 64.1 bits (149), Expect = 8e-11
Identities = 28/42 (66%), Positives = 32/42 (76%)
Frame = +1
Query: 382 YDPSIGIYGLDFYVVLGRPGFNVAHRRRKTGKVGFPHRLTKE 507
YDPS GIYG+DFYVVL R G+ VA RRR +VG HR+TKE
Sbjct: 11 YDPSTGIYGMDFYVVLERAGYRVARRRRCKSRVGIQHRVTKE 52
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 44 GIQHRVTKEDAMKWFQVKYEG 64
>01_01_0582 - 4317216-4317731
Length = 171
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = -3
Query: 219 RRIPKDRTVYLALENTGCCPVSCSNTLAARVSLSPDSPTQMF 94
RRI ++ + L TGC P S S AARV S Q F
Sbjct: 98 RRILRENKKRILLCATGCVPASSSAAAAARVPYDAYSYAQNF 139
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,599,397
Number of Sequences: 37544
Number of extensions: 334468
Number of successful extensions: 917
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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