Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120006.Seq
(617 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A) 130 1e-30
At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D) 129 2e-30
At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D) 129 2e-30
At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C) 129 2e-30
At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B) ribo... 129 2e-30
At4g01310.1 68417.m00171 ribosomal protein L5 family protein con... 38 0.004
At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containi... 37 0.012
At4g30990.1 68417.m04398 expressed protein ; expression supporte... 29 1.9
At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containi... 29 2.5
At3g06210.1 68416.m00714 expressed protein contains Prosite PS00... 29 3.3
At4g14280.1 68417.m02201 hypothetical protein 28 5.7
At2g16950.1 68415.m01953 importin beta-2 subunit family protein ... 28 5.7
At2g31990.1 68415.m03908 exostosin family protein contains Pfam ... 27 10.0
>At2g42740.1 68415.m05293 60S ribosomal protein L11 (RPL11A)
Length = 172
Score = 130 bits (313), Expect = 1e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RP
Sbjct: 67 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 126
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TK+
Sbjct: 127 GYRVARRRRCKARVGIQHRVTKD 149
Score = 106 bits (255), Expect = 1e-23
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = +2
Query: 62 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 241
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 242 CTVRELKQKKSL 277
TVR K + L
Sbjct: 61 VTVRGEKAMQLL 72
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At5g45775.2 68418.m05629 60S ribosomal protein L11 (RPL11D)
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RP
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 136
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TK+
Sbjct: 137 GYRVARRRRCKTRVGIQHRVTKD 159
Score = 110 bits (265), Expect = 6e-25
Identities = 56/80 (70%), Positives = 64/80 (80%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At5g45775.1 68418.m05628 60S ribosomal protein L11 (RPL11D)
Length = 172
Score = 129 bits (311), Expect = 2e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RP
Sbjct: 67 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 126
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TK+
Sbjct: 127 GYRVARRRRCKTRVGIQHRVTKD 149
Score = 106 bits (255), Expect = 1e-23
Identities = 53/72 (73%), Positives = 61/72 (84%)
Frame = +2
Query: 62 MRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVH 241
MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA +
Sbjct: 1 MRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACY 60
Query: 242 CTVRELKQKKSL 277
TVR K + L
Sbjct: 61 VTVRGEKAMQLL 72
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 141 GIQHRVTKDDAMKWFQVKYEG 161
>At4g18730.1 68417.m02768 60S ribosomal protein L11 (RPL11C)
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RP
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 136
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TK+
Sbjct: 137 GYRVARRRRCKTRVGIQHRVTKD 159
Score = 110 bits (265), Expect = 6e-25
Identities = 56/80 (70%), Positives = 64/80 (80%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At3g58700.1 68416.m06542 60S ribosomal protein L11 (RPL11B)
ribosomal protein L11, cytosolic, Arabidopsis thaliana,
PIR:S49033
Length = 182
Score = 129 bits (311), Expect = 2e-30
Identities = 60/83 (72%), Positives = 68/83 (81%)
Frame = +1
Query: 259 KAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRP 438
KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DFYVVL RP
Sbjct: 77 KAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERP 136
Query: 439 GFNVAHRRRKTGKVGFPHRLTKE 507
G+ VA RRR +VG HR+TK+
Sbjct: 137 GYRVARRRRCKTRVGIQHRVTKD 159
Score = 110 bits (265), Expect = 6e-25
Identities = 56/80 (70%), Positives = 64/80 (80%)
Frame = +2
Query: 38 SEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIR 217
SE N MR++ ++KL LNI VGESGDRLTRA+KVLEQL+GQ PVFSKARYTVRSFGIR
Sbjct: 3 SEKKLSNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIR 62
Query: 218 RNEKIAVHCTVRELKQKKSL 277
RNEKIA + TVR K + L
Sbjct: 63 RNEKIACYVTVRGEKAMQLL 82
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 480 GISPPPHKGSAMKWFQQKYDG 542
GI K AMKWFQ KY+G
Sbjct: 151 GIQHRVTKDDAMKWFQVKYEG 171
>At4g01310.1 68417.m00171 ribosomal protein L5 family protein
contains Pfam profiles PF00673: ribosomal L5P family
C-terminus, PF00281: ribosomal protein L5
Length = 262
Score = 38.3 bits (85), Expect = 0.004
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Frame = +2
Query: 56 NVMRNLHIRKLCLNICVGESGDR---LTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNE 226
N+ + ++K+ +N +G++ L A K + +TGQ+P+ ++AR ++ +F IR ++
Sbjct: 79 NIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQKPIKTRARASIATFKIREDQ 138
Query: 227 KIAVHCTVR 253
+ + T+R
Sbjct: 139 PLGIAVTLR 147
>At1g04840.1 68414.m00480 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 36.7 bits (81), Expect = 0.012
Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Frame = +1
Query: 268 EILERGLKVREYELRR--DNFSATGNFGFGIQEH---IDLGIKYDPSIGIYGLDFYVVLG 432
E+LE+GLK EY + S +G G GI+ H +D GIK D +IG +D Y G
Sbjct: 283 EMLEKGLKPNEYTIAAVLSACSKSGALGSGIRIHGYILDNGIKLDRAIGTALVDMYAKCG 342
>At4g30990.1 68417.m04398 expressed protein ; expression supported
by MPSS
Length = 2138
Score = 29.5 bits (63), Expect = 1.9
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = -2
Query: 241 MDSNLFIT-TDTKRPHCIPSLGKYRLLSCELLQHLGGTS----QPVTGFTNTDVQAKLSD 77
+DS+L I T R H S GKY+L+ L L GT+ +TG ++D++ LS
Sbjct: 465 VDSSLLICFKKTLRQHLAVSDGKYQLMIHSFLHSLLGTTLRSCYKMTGINHSDLEEALSF 524
Query: 76 MK 71
K
Sbjct: 525 AK 526
>At3g13880.1 68416.m01754 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 748
Score = 29.1 bits (62), Expect = 2.5
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 244 YSPRAKAEEILERGLKVREYELRRDNFSATGNFGF-GIQEHIDLGIKYDPSIGIYGLDFY 420
Y+ E+ +E L+ RE L+ D F+ G GF G + +DLG + + GL
Sbjct: 123 YTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFCGERCDLDLGELLHGLVVVNGLSQQ 182
Query: 421 VVL 429
V L
Sbjct: 183 VFL 185
>At3g06210.1 68416.m00714 expressed protein contains Prosite
PS00616: Histidine acid phosphatases phosphohistidine
signature;
Length = 840
Score = 28.7 bits (61), Expect = 3.3
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Frame = +2
Query: 182 KARYTVRSFGIRRNEKIAVHCTVRELKQKKSLRGV*KSENMNCGVTTSPPRVILASVF-- 355
+A +TV GI + ++ ++ L+ K + ++ G+ + R+ +F
Sbjct: 140 QATWTVSGVGIS-SFRVLQSSSISLLRNLKRISDGIFKPILDNGLREATTRIGRQEIFDR 198
Query: 356 KNTLTWVSSTIPQLEFMDWTFTSYLAGQV 442
+ TLTW +S +P L + W + S ++
Sbjct: 199 RTTLTWKNSEVPLLPYARWLYISSYVSRI 227
>At4g14280.1 68417.m02201 hypothetical protein
Length = 798
Score = 27.9 bits (59), Expect = 5.7
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 362 TLTWVSSTIPQLEFMDWTFTS 424
T TW SS +P L + W F S
Sbjct: 167 TRTWKSSDVPMLPYTGWVFVS 187
>At2g16950.1 68415.m01953 importin beta-2 subunit family protein
similar to SP|Q92973 Importin beta-2 subunit
(Transportin) {Homo sapiens}; contains Pfam profile
PF03810: Importin-beta N-terminal domain
Length = 891
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = +2
Query: 32 EGSEDNSKNVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKAR 190
EG +++++ ++R L LN C+ E+ D A ++ L PV+ + R
Sbjct: 650 EGLGSGIESLVQQSNLRDLLLNCCIDEAADVRQSAFALMGDLARVFPVYLQPR 702
>At2g31990.1 68415.m03908 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 479
Score = 27.1 bits (57), Expect = 10.0
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = +2
Query: 101 CVGESGDRLTRAAKVLEQLTGQQPVF--SKARYTVRSFGIRRN-EKIAVHCTVRELK 262
C+ GD LTR + L G PVF + Y + I +N K +V+ TV+EL+
Sbjct: 349 CLQPPGDSLTRKSVFDSILAGCIPVFFNQGSAYKQYLWHIPKNSSKYSVYITVKELR 405
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,608,507
Number of Sequences: 28952
Number of extensions: 273726
Number of successful extensions: 773
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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