BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120005.Seq (647 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical pr... 29 2.1 AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical... 29 2.1 Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical pr... 29 3.8 Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 29 3.8 U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n... 28 6.6 U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n... 28 6.6 U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n... 28 6.6 U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily ass... 28 6.6 AF067608-5|AAK95865.1| 523|Caenorhabditis elegans Hypothetical ... 27 8.7 >Z81465-4|CAB03866.3| 613|Caenorhabditis elegans Hypothetical protein Y54E2A.1 protein. Length = 613 Score = 29.5 bits (63), Expect = 2.1 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Frame = +1 Query: 76 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 237 GN+M + V R V AS+ + D C I + P Y W F C S Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148 Query: 238 HLIKRLKCQKWFCPFSTKTTIN 303 H I++ C FC T T I+ Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167 >AL032646-13|CAA21687.3| 613|Caenorhabditis elegans Hypothetical protein Y54E2A.1 protein. Length = 613 Score = 29.5 bits (63), Expect = 2.1 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 6/82 (7%) Frame = +1 Query: 76 GNNMALMPVGMAPRQMRVNRCIFASIVSFDAC-ITYKSPCSPDAYHDDGW----FICNS- 237 GN+M + V R V AS+ + D C I + P Y W F C S Sbjct: 89 GNSMVIFVVNRFKRMRNVTNIFLASLSTADLCLIWFCVPIMFMKYMSHTWSMGRFACYSV 148 Query: 238 HLIKRLKCQKWFCPFSTKTTIN 303 H I++ C FC T T I+ Sbjct: 149 HYIQQFTC---FCSVLTMTMIS 167 >Z82260-3|CAB05131.1| 346|Caenorhabditis elegans Hypothetical protein C32H11.4 protein. Length = 346 Score = 28.7 bits (61), Expect = 3.8 Identities = 11/37 (29%), Positives = 20/37 (54%) Frame = +1 Query: 100 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 210 +GM P + + + +FA+ S D + SP P+ Y+ Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182 >Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein F54E4.1 protein. Length = 2948 Score = 28.7 bits (61), Expect = 3.8 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 1/113 (0%) Frame = +3 Query: 282 FDEDDNQFKMTIARHLVGNKERGIKRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEE 461 FDE N+FK+ HL +++ + N + V+ L ++ E L F + Sbjct: 18 FDEIKNRFKICKNDHLKHQTSMNAHQVITGALNNGENVYALGNI---EGLTFTACAVGSD 74 Query: 462 AVNVICDNLKYTEVFTAARN-ALYTAFTQLQEAF*TPQTRTRFVRVCRATNCG 617 V ++ + ++ ++N L ++ + QE T V++ ATN G Sbjct: 75 VV-ILDSDFNRVQIIPESKNHLLVSSLSCCQETGKIAVTYGNLVKILEATNSG 126 >U97593-7|AAB52878.1| 591|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform b protein. Length = 591 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553 ++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T + Sbjct: 28 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 72 >U97593-6|AAB52879.2| 925|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform c protein. Length = 925 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553 ++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T + Sbjct: 447 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 491 >U97593-5|AAB52880.1| 1175|Caenorhabditis elegans Prion-like-(q/n-rich)-domain-bearingprotein protein 22, isoform a protein. Length = 1175 Score = 27.9 bits (59), Expect = 6.6 Identities = 16/51 (31%), Positives = 27/51 (52%) Frame = +2 Query: 401 SKQYDASRTTNLSFDI*QXXXXXXYMRQSKIYRSFHSGTQRVIHSVYATTR 553 ++QY ++ T+N Q Y +Q Y+S HS QR+++S Y T + Sbjct: 612 TRQYSSNATSNYPSQTQQ------YQQQQHQYQSDHSNAQRLLNSGYNTNQ 656 >U12966-3|AAA20614.1| 128|Caenorhabditis elegans Temporarily assigned gene nameprotein 174 protein. Length = 128 Score = 27.9 bits (59), Expect = 6.6 Identities = 9/18 (50%), Positives = 14/18 (77%) Frame = +1 Query: 541 RNYKKHSRHHKPEHVLFA 594 +++KKH H +PEHV +A Sbjct: 72 KDHKKHMSHERPEHVEYA 89 >AF067608-5|AAK95865.1| 523|Caenorhabditis elegans Hypothetical protein B0511.8 protein. Length = 523 Score = 27.5 bits (58), Expect = 8.7 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = +1 Query: 490 NIPKFSQRHATRYTQRLRNYKKHSRHHKPEHVL 588 N+P S +T Y R Y+K +HH+P+H+L Sbjct: 41 NVPAKSANASTVY--RPPYYRKPHQHHEPKHML 71 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 14,598,910 Number of Sequences: 27780 Number of extensions: 291945 Number of successful extensions: 801 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 776 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 801 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1434198608 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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