Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120003.Seq
         (731 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  

>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 116 VLKRLSNGFIDKSVDVGSISELQKFN 193
           ++  L  G I + +  GSISE QKF+
Sbjct: 413 IVSGLITGLIMRVLICGSISEEQKFD 438


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 213 VSRFILKLNFCNSLIEP 163
           +S   L L +CNSL+ P
Sbjct: 408 LSSLFLWLGYCNSLLNP 424


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +1

Query: 238 VRVCSLEHNLSTVHVINAETKTKLGHINVSLNQNDPN 348
           +  C    N ST+   NA T     + N + N N+ N
Sbjct: 216 LETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNN 252


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 443 IAEHVFDMLLERHGSFENYPIVTR 514
           +AE   D +LE+ G+F    +  R
Sbjct: 171 VAEETVDYMLEKSGNFSRLVVFFR 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,539
Number of Sequences: 438
Number of extensions: 3657
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)