Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120003.Seq
(731 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02350.1 68418.m00158 DC1 domain-containing protein contains ... 30 1.4
At4g38730.1 68417.m05486 expressed protein 30 1.8
At4g09640.1 68417.m01584 expressed protein several hypothetical ... 29 4.2
At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR... 29 4.2
At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR... 28 5.6
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 28 5.6
At3g23870.1 68416.m03000 permease-related low similarity to puri... 28 5.6
At1g34470.1 68414.m04283 permease-related low similarity to puri... 28 5.6
At5g02330.1 68418.m00156 DC1 domain-containing protein contains ... 28 7.3
At1g71900.1 68414.m08312 expressed protein 28 7.3
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr... 27 9.7
At4g13800.1 68417.m02139 permease-related contains 9 predicted t... 27 9.7
At1g04050.1 68414.m00392 SET domain-containing protein / suppres... 27 9.7
>At5g02350.1 68418.m00158 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 651
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +1
Query: 562 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITI 714
D++++C+ C I + C++ L CA A++ +H G +T+
Sbjct: 388 DENIICQACILPIYEGNYYSCMDQCDFVLHEACANASRKKDHALHGHPLTL 438
>At4g38730.1 68417.m05486 expressed protein
Length = 326
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQAVD 520
FN + PI+Y FT L ++ I+FK N Q D
Sbjct: 237 FNAAIVSPIYYVMFTTL--TIVASAIMFKDWNGQNTD 271
>At4g09640.1 68417.m01584 expressed protein several hypothetical
proteins - Arabidopsis thaliana
Length = 386
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFKPVNDQA 526
FNT V PI+Y FT L ++ +I+FK + Q+
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFKDWDRQS 283
>At1g31540.1 68414.m03869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 776
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 201 ILKLNFCNSLIEPTSTDLSINPLLN 127
IL L FC SL+E S+ ++N LLN
Sbjct: 655 ILNLKFCESLVELPSSIRNLNKLLN 679
>At5g46270.1 68418.m05696 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1145
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -3
Query: 201 ILKLNFCNSLIEPTSTDLSINPLL 130
ILKL FC SL+E S+ ++N LL
Sbjct: 654 ILKLGFCKSLVELPSSIRNLNKLL 677
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 5 VVSMCVDNAFA-YTTDDLLKNISFSHSKCAPFKLQNYTVLKRLSNGFI 145
V S+ +N FA D LLK +S + K P+K Q V ++ S+G I
Sbjct: 1644 VFSLLDENIFAGMNKDQLLKKLSNTVVKDLPYKCQKIVVTEQDSSGCI 1691
>At3g23870.1 68416.m03000 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007; contains 9
predicted transmembrane domains; contains Pfam PF05653:
Protein of unknown function (DUF803); identified as
COG0697, Permeases of the drug/metabolite transporter
(DMT) superfamily
Length = 335
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V P++Y FT +I +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTIIASMIMFK 266
>At1g34470.1 68414.m04283 permease-related low similarity to purine
permease [Arabidopsis thaliana] GI:7620007
Length = 368
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAVVSPIYYVMFTSL--TILASVIMFK 277
>At5g02330.1 68418.m00156 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 656
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/54 (20%), Positives = 26/54 (48%)
Frame = +1
Query: 562 DDHVVCEYCEAEIKNWSEDECIEYAHVTLSPYCAYANKIAEHESFGDNITINAV 723
+++++C+ C I + C++ + L CA A++ +H +T+ V
Sbjct: 388 NENIICQACILPIYEGNYYSCMDQCNFILHEACANASRKKDHALHSHPLTLKVV 441
>At1g71900.1 68414.m08312 expressed protein
Length = 343
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT + PI+Y FT L ++ +I+FK
Sbjct: 251 FNTAIVSPIYYVMFTSL--TILASVIMFK 277
>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 895
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 158 DVGSISELQKFNFKINRLTSYISNI 232
+VGS+ +LQK N N+L S+ S +
Sbjct: 425 NVGSLKDLQKLNLSFNQLESFGSEL 449
>At4g13800.1 68417.m02139 permease-related contains 9 predicted
transmembrane domains; contains Pfam PF05653: Protein of
unknown function (DUF803); identified as COG0697,
Permeases of the drug/metabolite transporter (DMT)
superfamily
Length = 336
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 630 FNTLVFGPIFYFCFTILAHNVIVDLIVFK 544
FNT V P++Y FT ++ +I+FK
Sbjct: 240 FNTAVISPVYYVMFT--TFTILASMIMFK 266
>At1g04050.1 68414.m00392 SET domain-containing protein / suppressor
of variegation related 1 (SUVR1) identical to suppressor
of variegation related 1 [Arabidopsis thaliana]
GI:15004614; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA trithorax 3
(ATX3) partial cds GI:15217142
Length = 630
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +2
Query: 20 VDNAFAYTTDDLLKNISFSHSKCAPFKLQNYTVLK 124
VDN FAYT D LLK F ++ + + Q VL+
Sbjct: 377 VDNGFAYTLDGLLKE-EFLEARISEARDQRKQVLR 410
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,055,403
Number of Sequences: 28952
Number of extensions: 269189
Number of successful extensions: 711
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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