Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060991.seq
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 86 2e-17
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34) 81 1e-15
SB_5067| Best HMM Match : RCC1 (HMM E-Value=4.5e-16) 73 2e-13
SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19) 72 4e-13
SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041) 72 4e-13
SB_7970| Best HMM Match : RCC1 (HMM E-Value=0) 72 5e-13
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 5e-12
SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072) 67 1e-11
SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.) 63 2e-10
SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18) 62 3e-10
SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26) 62 3e-10
SB_18907| Best HMM Match : RCC1 (HMM E-Value=0) 58 7e-09
SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14) 56 2e-08
SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.) 56 2e-08
SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21) 54 8e-08
SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08) 52 6e-07
SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 40 0.002
SB_23006| Best HMM Match : RCC1 (HMM E-Value=0.014) 32 0.38
SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063) 32 0.50
SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6) 30 1.5
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 29 2.7
SB_25936| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_12877| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.7
SB_26949| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 86.2 bits (204), Expect = 2e-17
Identities = 42/120 (35%), Positives = 68/120 (56%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ACG Q SLA+ G ++WG +LG+ H + KP+ V GL K ++ VA GA H
Sbjct: 1685 VACGAQFSLALSTSGLVWTWGKGDYYRLGHGNDTHVR-KPQIVDGLRGKKIVDVAVGALH 1743
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+A+T+SG +++WG N +GQ G + Q ++ L G I + CG++H+ ++S
Sbjct: 1744 CLAVTDSGQVFAWGDNDHGQQGNNTTTVNR-RPQLVNGLEGQKITRVACGSSHSIAWAES 1802
Score = 77.8 bits (183), Expect = 8e-15
Identities = 40/118 (33%), Positives = 65/118 (55%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ CG Q S+A+ G ++WG +LG+ + H + +PK V L K VI +A G+ H
Sbjct: 2630 VECGSQFSVALTRSGAVYTWGKGDYYRLGHGVDDHVR-RPKRVAALQGKKVITIATGSLH 2688
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
VA T++G++Y+WG N GQ G + + +++L G I+ + CG+ HT S
Sbjct: 2689 CVASTDTGEVYTWGDNDEGQLG-DGTTNAIARPRLVTALQGKKISRVACGSAHTIAWS 2745
Score = 69.3 bits (162), Expect = 3e-12
Identities = 28/87 (32%), Positives = 50/87 (57%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
+ + G +H++A+ G +SWG G+LG+ ++ D+P+ ++ L K VI ++
Sbjct: 2467 VRKVAVHSGGKHAMALSADGDVYSWGEGDDGKLGHG-NRNSCDRPRVIEALRGKGVIDIS 2525
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
CG HS +T + +LY+WG YG+ G
Sbjct: 2526 CGGSHSACITQNHELYTWGKGRYGRLG 2552
Score = 68.5 bits (160), Expect = 5e-12
Identities = 40/129 (31%), Positives = 68/129 (52%), Gaps = 2/129 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA-- 433
I+CG HS I + + ++WG G+LG+ + Q PK V+ L VI VACG+
Sbjct: 2524 ISCGGSHSACITQNHELYTWGKGRYGRLGHG-DSEDQLLPKVVEALRGNRVIDVACGSGD 2582
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
++ LT+ ++SWG YG+ G K ++ + SLIG+ ++ + CG+ + L+
Sbjct: 2583 AQTLCLTDDDCVWSWGDGDYGKLGRGGSDGCKIPMK-VESLIGLGVSKVECGSQFSVALT 2641
Query: 614 KSRCGFWMG 640
+S + G
Sbjct: 2642 RSGAVYTWG 2650
Score = 66.9 bits (156), Expect = 1e-11
Identities = 38/123 (30%), Positives = 64/123 (52%), Gaps = 3/123 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA-- 433
++CG HS AI G+ ++WG G+LG+ + KPK V+ + VI +ACG+
Sbjct: 1579 MSCGSSHSAAILSSGELYTWGLGEYGRLGHG-DNYTHLKPKKVQSFTSHRVIDIACGSRD 1637
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH-ISSLIGVPIALITCGNNHTFVL 610
++ALT+ G ++SWG +G+ G + C + + + L G + + CG + L
Sbjct: 1638 AQTLALTDDGTVWSWGDGDFGKLGRG--GSEGCSVPNPVEKLQGQGVCKVACGAQFSLAL 1695
Query: 611 SKS 619
S S
Sbjct: 1696 STS 1698
Score = 65.3 bits (152), Expect = 4e-11
Identities = 29/87 (33%), Positives = 50/87 (57%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
+ ++ G +H++A+ G+ FSWG G+LG+ + D PK + + V ++
Sbjct: 1522 VRKVSVHSGGRHAMALTIEGKLFSWGEGEDGKLGHGNRMNC-DHPKLIDTFKSSCVRDMS 1580
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
CG+ HS A+ +SG+LY+WG YG+ G
Sbjct: 1581 CGSSHSAAILSSGELYTWGLGEYGRLG 1607
Score = 60.1 bits (139), Expect = 2e-09
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 2/122 (1%)
Frame = +2
Query: 260 IACGLQ--HSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
IACG + +LA+ + G +SWG G+LG G+ P V+ L + V +VACGA
Sbjct: 1631 IACGSRDAQTLALTDDGTVWSWGDGDFGKLGRG-GSEGCSVPNPVEKLQGQGVCKVACGA 1689
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
S+AL+ SG +++WG Y + G T Q + L G I + G H ++
Sbjct: 1690 QFSLALSTSGLVWTWGKGDYYRLG-HGNDTHVRKPQIVDGLRGKKIVDVAVGALHCLAVT 1748
Query: 614 KS 619
S
Sbjct: 1749 DS 1750
Score = 53.2 bits (122), Expect = 2e-07
Identities = 35/115 (30%), Positives = 55/115 (47%), Gaps = 2/115 (1%)
Frame = +2
Query: 260 IACGL--QHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
+ACG +L + + +SWG G+LG G+ P V+ L V +V CG+
Sbjct: 2576 VACGSGDAQTLCLTDDDCVWSWGDGDYGKLGRG-GSDGCKIPMKVESLIGLGVSKVECGS 2634
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNH 598
SVALT SG +Y+WG Y + G + + +++L G + I G+ H
Sbjct: 2635 QFSVALTRSGAVYTWGKGDYYRLGHGV-DDHVRRPKRVAALQGKKVITIATGSLH 2688
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/64 (37%), Positives = 39/64 (60%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
TIA G H +A + G+ ++WG + GQLG+ +A +P+ V L K + +VACG+
Sbjct: 2681 TIATGSLHCVASTDTGEVYTWGDNDEGQLGDGT-TNAIARPRLVTALQGKKISRVACGSA 2739
Query: 437 HSVA 448
H++A
Sbjct: 2740 HTIA 2743
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = +2
Query: 302 GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWG 481
G + WG + GQLG+ GA + P+ ++ LA+ +Q+ G A+T G +Y+ G
Sbjct: 2380 GTIYGWGHNHRGQLGSLEGAKVK-LPQTIEALASIRPVQIVGGEQTLFAVTAEGKVYATG 2438
Query: 482 ANSYGQCGLELYQTRKCHLQHISSLIGVPI--ALITCGNNHTFVLS 613
G+ GL T ++ + SL V + + G H LS
Sbjct: 2439 YGHGGRLGLGGTDT-VTSIKMLESLQHVVVRKVAVHSGGKHAMALS 2483
Score = 35.9 bits (79), Expect = 0.031
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQT 197
G + D V +P + + +A G H + +++G +Y+ G+ND GQLG T
Sbjct: 2658 GHGVDDHVRRPKRVAALQGKKVITIATGSLHCVASTDTGEVYTWGDNDEGQLGDGT 2713
>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
Length = 1790
Score = 80.6 bits (190), Expect = 1e-15
Identities = 41/118 (34%), Positives = 68/118 (57%)
Frame = +2
Query: 275 QHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALT 454
+H LA+ G+ +SWGS G+LG+ +++P V GLA K VI+++CG+ HS A+T
Sbjct: 553 KHFLALTREGEVYSWGSGDGGKLGHG-DTSPREEPTLVTGLAGKQVIRISCGSTHSAAVT 611
Query: 455 NSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKSRCG 628
+ G+LY+WG +YG+ G + + + +S L G I + CG+ L+ + G
Sbjct: 612 SEGELYTWGRGNYGRLGHGSSEDQLVPVL-VSGLRGHHIIDVACGSGDAHTLAAADDG 668
Score = 72.5 bits (170), Expect = 3e-13
Identities = 42/118 (35%), Positives = 61/118 (51%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ CG Q SLA+ G ++WG +LG+ H + PK V+ L K+V+ V+ G+ H
Sbjct: 706 VYCGAQFSLALTRDGSVWTWGKGEGFRLGHGTEDHVRH-PKLVEALDGKHVVDVSVGSIH 764
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
+ALT++G++Y WG N GQ G Q R +S L I I CG +F S
Sbjct: 765 CLALTDAGEVYCWGRNDQGQLGDIDCQIRP-EPTLVSGLASKGIVGIACGPAQSFAWS 821
Score = 68.5 bits (160), Expect = 5e-12
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 2/121 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA-- 433
I+CG HS A+ G+ ++WG + G+LG+ + Q P V GL ++I VACG+
Sbjct: 600 ISCGSTHSAAVTSEGELYTWGRGNYGRLGHG-SSEDQLVPVLVSGLRGHHIIDVACGSGD 658
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
H++A + G ++SWG YG+ G K + + I L G+ + + CG + L+
Sbjct: 659 AHTLAAADDGTVWSWGDGDYGKLGRGGSDGCK-NPKSIERLQGLGVCKVYCGAQFSLALT 717
Query: 614 K 616
+
Sbjct: 718 R 718
Score = 61.7 bits (143), Expect = 5e-10
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 5/127 (3%)
Frame = +2
Query: 248 HNTTIACGL--QHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQV 421
H +ACG H+LA + G +SWG G+LG G+ PK ++ L V +V
Sbjct: 648 HIIDVACGSGDAHTLAAADDGTVWSWGDGDYGKLGRG-GSDGCKNPKSIERLQGLGVCKV 706
Query: 422 ACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH---ISSLIGVPIALITCGN 592
CGA S+ALT G +++WG G L + H++H + +L G + ++ G+
Sbjct: 707 YCGAQFSLALTRDGSVWTWGKGE----GFRLGHGTEDHVRHPKLVEALDGKHVVDVSVGS 762
Query: 593 NHTFVLS 613
H L+
Sbjct: 763 IHCLALT 769
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/72 (33%), Positives = 41/72 (56%)
Frame = +2
Query: 248 HNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVAC 427
H ++ G H LA+ + G+ + WG + GQLG ++ + +P V GLA+K ++ +AC
Sbjct: 754 HVVDVSVGSIHCLALTDAGEVYCWGRNDQGQLG-DIDCQIRPEPTLVSGLASKGIVGIAC 812
Query: 428 GAYHSVALTNSG 463
G S A + +G
Sbjct: 813 GPAQSFAWSCAG 824
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
G D V P L + + H+ V+ G H L L+++G +Y G ND GQLG
Sbjct: 734 GHGTEDHVRHPKLVEALDGKHVVDVSVGSIHCLALTDAGEVYCWGRNDQGQLG 786
Score = 37.9 bits (84), Expect = 0.008
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVA--AGEFHSLYLSNSGHLYSCGNNDVGQLGRQTES 203
GS LV P L HI VA +G+ H+L ++ G ++S G+ D G+LGR S
Sbjct: 630 GSSEDQLV--PVLVSGLRGHHIIDVACGSGDAHTLAAADDGTVWSWGDGDYGKLGR-GGS 686
Query: 204 DNGKNPALVE 233
D KNP +E
Sbjct: 687 DGCKNPKSIE 696
Score = 32.7 bits (71), Expect = 0.29
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESD 206
+PTL + ++ G HS +++ G LY+ G + G+LG + D
Sbjct: 585 EPTLVTGLAGKQVIRISCGSTHSAAVTSEGELYTWGRGNYGRLGHGSSED 634
>SB_5067| Best HMM Match : RCC1 (HMM E-Value=4.5e-16)
Length = 390
Score = 72.9 bits (171), Expect = 2e-13
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 4/117 (3%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGA----HAQDKPKFVKGLATKNVIQVAC 427
+ACG +HS E G+ FS+G++ QLG + Q KP +V L + V+QVAC
Sbjct: 181 VACGTRHSFVWTEEGECFSFGNNYSAQLGYDFRKPDFKDNQLKPIYVDTLFNRKVLQVAC 240
Query: 428 GAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNH 598
G+ HS+ L ++G + + G N+ GQ G+ C +Q++ L GV + + CGN+H
Sbjct: 241 GSRHSLFLFSNGHVAAVGCNNRGQIGIGNKTDTFC-IQNVPDLTGVTV--VACGNSH 294
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/125 (31%), Positives = 61/125 (48%), Gaps = 6/125 (4%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVK-GLATKNVIQ-VAC 427
T IACG H+L I G+ FSWG+ + GQLG + +P V G+ I+ VAC
Sbjct: 125 THIACGSSHTLVITGDGRLFSWGNGNSGQLGIG-STNTTLQPHLVPLGVTPGTRIEGVAC 183
Query: 428 GAYHSVALTNSGDLYSWGANSYGQCGLEL----YQTRKCHLQHISSLIGVPIALITCGNN 595
G HS T G+ +S+G N Q G + ++ + ++ +L + + CG+
Sbjct: 184 GTRHSFVWTEEGECFSFGNNYSAQLGYDFRKPDFKDNQLKPIYVDTLFNRKVLQVACGSR 243
Query: 596 HTFVL 610
H+ L
Sbjct: 244 HSLFL 248
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +2
Query: 410 VIQVACGAYHSVALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITC 586
V +ACG+ H++ +T G L+SWG + GQ G+ T + HL + G I + C
Sbjct: 124 VTHIACGSSHTLVITGDGRLFSWGNGNSGQLGIGSTNTTLQPHLVPLGVTPGTRIEGVAC 183
Query: 587 GNNHTFVLSKSRCGFWMG*KHS 652
G H+FV ++ F G +S
Sbjct: 184 GTRHSFVWTEEGECFSFGNNYS 205
Score = 35.5 bits (78), Expect = 0.041
Identities = 23/74 (31%), Positives = 36/74 (48%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ACG +HSL + G + G ++ GQ+G +G + D V VACG H
Sbjct: 238 VACGSRHSLFLFSNGHVAAVGCNNRGQIG--IG-NKTDTFCIQNVPDLTGVTVVACGNSH 294
Query: 440 SVALTNSGDLYSWG 481
+A G +++WG
Sbjct: 295 CLAADVQGQVWAWG 308
Score = 35.1 bits (77), Expect = 0.054
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 45 DLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESD 206
D +KP + + VA G HSL+L ++GH+ + G N+ GQ+G ++D
Sbjct: 219 DNQLKPIYVDTLFNRKVLQVACGSRHSLFLFSNGHVAAVGCNNRGQIGIGNKTD 272
Score = 33.9 bits (74), Expect = 0.12
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+ + +A G H+L ++ G L+S GN + GQLG
Sbjct: 120 QDGQVTHIACGSSHTLVITGDGRLFSWGNGNSGQLG 155
Score = 33.1 bits (72), Expect = 0.22
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWG-SDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACG 430
T +ACG H LA D GQ ++WG S + G + L P+ + V ++ G
Sbjct: 286 TVVACGNSHCLAADVQGQVWAWGYSKACGAREDLL------SPENIFTSTDSCVKALSGG 339
Query: 431 AYHSVALTNSGDLYSWGAN 487
HS+ L ++G L + G N
Sbjct: 340 DSHSMILLHNGRLLTVGNN 358
Score = 31.9 bits (69), Expect = 0.50
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG---RQTE-SDNGKNPALVET 236
I+ VA G HS + G +S GNN QLG R+ + DN P V+T
Sbjct: 178 IEGVACGTRHSFVWTEEGECFSFGNNYSAQLGYDFRKPDFKDNQLKPIYVDT 229
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/44 (31%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNN-----DVGQLGRQTESDN 209
++A++ G+ HS+ L ++G L + GNN + G L + ++DN
Sbjct: 333 VKALSGGDSHSMILLHNGRLLTVGNNYEVSDNKGDLKDRVQTDN 376
>SB_17186| Best HMM Match : RCC1 (HMM E-Value=1.5e-19)
Length = 637
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/114 (34%), Positives = 56/114 (49%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ CG Q SLA+ GQ + WG LG PK + L + +V+ ++ G H
Sbjct: 516 VCCGSQCSLALTSTGQVYVWGCGP--SLGTGSVDATSATPKLLLALQSHSVVDISVGDSH 573
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
VALT ++Y+WG NS GQCG T + + L GV + I+ G +HT
Sbjct: 574 CVALTQDNNVYAWGNNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTSHT 627
Score = 64.9 bits (151), Expect = 6e-11
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACGAYHSVALT 454
H+LA+ G+ +SWG G+LG+ + Q PK V+G L K V +A G HS A+T
Sbjct: 396 HTLALTLDGKVYSWGDGDYGKLGHG-NSQTQKIPKLVEGALGNKVVCCIAAGYRHSAAVT 454
Query: 455 NSGDLYSWGANSYGQCG 505
G+LY+WG YG+ G
Sbjct: 455 EDGELYTWGEGDYGRLG 471
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+ G H +A+ + ++WG++SMGQ G KPK V GL V Q++ G H
Sbjct: 567 ISVGDSHCVALTQDNNVYAWGNNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTSH 626
Query: 440 SVALT 454
+VA T
Sbjct: 627 TVAWT 631
Score = 42.3 bits (95), Expect = 4e-04
Identities = 29/94 (30%), Positives = 48/94 (51%), Gaps = 20/94 (21%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGN------NLGAH----AQDKPKFVKGLATKN 409
IA G +HS A+ E G+ ++WG G+LG+ + H +++ P VK +A
Sbjct: 443 IAAGYRHSAAVTEDGELYTWGEGDYGRLGSCHSIARPVSGHGDNNSRNVPVQVKDVANVG 502
Query: 410 VI----------QVACGAYHSVALTNSGDLYSWG 481
+ +V CG+ S+ALT++G +Y WG
Sbjct: 503 QVIEALQGMVIRKVCCGSQCSLALTSTGQVYVWG 536
Score = 37.1 bits (82), Expect = 0.013
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 2/101 (1%)
Frame = +2
Query: 320 GSDSMGQLG--NNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSY 493
G S G+LG ++ + F K+V H++ALT G +YSWG Y
Sbjct: 355 GKGSYGRLGLGDSTNQTQLKRLNFDNECLVKSVSSSKGSDGHTLALTLDGKVYSWGDGDY 414
Query: 494 GQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSK 616
G+ G QT+K +L + I G H+ +++
Sbjct: 415 GKLGHGNSQTQKIPKLVEGALGNKVVCCIAAGYRHSAAVTE 455
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR 191
P L +S + ++ G+ H + L+ ++Y+ GNN +GQ G+
Sbjct: 553 PKLLLALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCGQ 596
Score = 31.1 bits (67), Expect = 0.88
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = +3
Query: 120 HSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
H+L L+ G +YS G+ D G+LG S K P LVE
Sbjct: 396 HTLALTLDGKVYSWGDGDYGKLG-HGNSQTQKIPKLVE 432
Score = 31.1 bits (67), Expect = 0.88
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+AAG HS ++ G LY+ G D G+LG
Sbjct: 443 IAAGYRHSAAVTEDGELYTWGEGDYGRLG 471
>SB_2363| Best HMM Match : RCC1 (HMM E-Value=0.00041)
Length = 234
Score = 72.1 bits (169), Expect = 4e-13
Identities = 39/114 (34%), Positives = 56/114 (49%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ CG Q SLA+ GQ + WG LG PK + L + +V+ ++ G H
Sbjct: 13 VCCGSQCSLALTSTGQVYVWGCGP--SLGTGSVDATSATPKLLLALQSHSVVDISVGDSH 70
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
VALT ++Y+WG NS GQCG T + + L GV + I+ G +HT
Sbjct: 71 CVALTQDNNVYAWGNNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTSHT 124
Score = 45.2 bits (102), Expect = 5e-05
Identities = 24/65 (36%), Positives = 35/65 (53%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+ G H +A+ + ++WG++SMGQ G KPK V GL V Q++ G H
Sbjct: 64 ISVGDSHCVALTQDNNVYAWGNNSMGQCGQGHCTTPITKPKKVLGLDGVAVHQISAGTSH 123
Query: 440 SVALT 454
+VA T
Sbjct: 124 TVAWT 128
Score = 31.9 bits (69), Expect = 0.50
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR 191
P L +S + ++ G+ H + L+ ++Y+ GNN +GQ G+
Sbjct: 50 PKLLLALQSHSVVDISVGDSHCVALTQDNNVYAWGNNSMGQCGQ 93
Score = 31.1 bits (67), Expect = 0.88
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = +2
Query: 386 VKGLATKNVIQVACGAYHSVALTNSGDLYSWG 481
++ L + +V CG+ S+ALT++G +Y WG
Sbjct: 2 IEALQGMVIRKVCCGSQCSLALTSTGQVYVWG 33
>SB_7970| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 651
Score = 71.7 bits (168), Expect = 5e-13
Identities = 38/122 (31%), Positives = 63/122 (51%)
Frame = +2
Query: 248 HNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVAC 427
H ++ G HSLA+ G +SWG + G+LG+ + PK ++ A + V+ V+
Sbjct: 493 HVVAVSAGAAHSLALTADGSVWSWGWGASGRLGHGDEQNQLLLPKKIEAFAGQRVVAVSA 552
Query: 428 GAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFV 607
G HS ALT G L+SWG +YGQ G + R+ + + + G + ++ G H+
Sbjct: 553 GLRHSGALTADGALWSWGEGAYGQLG-HGDEQRQLLPKKVEAFAGQRVVAVSAGAYHSLA 611
Query: 608 LS 613
+S
Sbjct: 612 IS 613
Score = 68.9 bits (161), Expect = 4e-12
Identities = 39/127 (30%), Positives = 67/127 (52%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G HSLA+ G+ +SWG G+LG+ H Q PK ++GLA + V+ V+ G H
Sbjct: 133 VSAGYFHSLALTADGRVWSWGYGRDGRLGHGNTQH-QLLPKKLEGLAGQRVVAVSAGIAH 191
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
S+A+T G ++SWG +G+ G +T+ + I + + ++ G+ H+ L+
Sbjct: 192 SLAITADGSVWSWGWGGHGRLGHGEEKTQLLP-KKIEAFADQRVVAVSAGSGHSLALTAD 250
Query: 620 RCGFWMG 640
F G
Sbjct: 251 GAVFTWG 257
Score = 66.1 bits (154), Expect = 3e-11
Identities = 39/123 (31%), Positives = 61/123 (49%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
L ++ G HSLAI G +SWG G+LG+ Q PK V+ +V+ V+
Sbjct: 440 LRVVAVSAGAAHSLAITADGALWSWGYGDSGRLGHG-DEQDQLLPKKVEAFVGPHVVAVS 498
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTF 604
GA HS+ALT G ++SWG + G+ G Q + + I + G + ++ G H+
Sbjct: 499 AGAAHSLALTADGSVWSWGWGASGRLGHGDEQNQLLLPKKIEAFAGQRVVAVSAGLRHSG 558
Query: 605 VLS 613
L+
Sbjct: 559 ALT 561
Score = 64.9 bits (151), Expect = 6e-11
Identities = 34/118 (28%), Positives = 63/118 (53%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G+ HSLAI G +SWG G+LG+ Q PK ++ A + V+ V+ G+ H
Sbjct: 185 VSAGIAHSLAITADGSVWSWGWGGHGRLGHG-EEKTQLLPKKIEAFADQRVVAVSAGSGH 243
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
S+ALT G +++WG ++G+ G + + + I + +G ++ G H+ ++
Sbjct: 244 SLALTADGAVFTWGFGAHGRLG-HGDEQHQLLPKKIEAFVGQRAVAVSAGPRHSLAIT 300
Score = 64.1 bits (149), Expect = 1e-10
Identities = 38/118 (32%), Positives = 60/118 (50%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G HSLAI G +SWG GQLG+ Q PK ++ A V+ V+ GA H
Sbjct: 393 VSAGEYHSLAIIADGAVWSWGFGYHGQLGHG-DQQIQLLPKQIEAFAGLRVVAVSAGAAH 451
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
S+A+T G L+SWG G+ G Q + + + + +G + ++ G H+ L+
Sbjct: 452 SLAITADGALWSWGYGDSGRLGHGDEQDQLLP-KKVEAFVGPHVVAVSAGAAHSLALT 508
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/118 (29%), Positives = 59/118 (50%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G HS+AI G +SWG G+LG+ Q P + A + V+ V+ G YH
Sbjct: 341 VSAGSDHSIAISADGAVWSWGDGDFGKLGHG-DEQNQLLPTKKEAFAGQRVVAVSAGEYH 399
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
S+A+ G ++SWG +GQ G Q + Q I + G+ + ++ G H+ ++
Sbjct: 400 SLAIIADGAVWSWGFGYHGQLGHGDQQIQLLPKQ-IEAFAGLRVVAVSAGAAHSLAIT 456
Score = 63.3 bits (147), Expect = 2e-10
Identities = 36/119 (30%), Positives = 61/119 (51%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+++ G H LA+ G +SWG G+LG+ H Q PK V+ A + V+ V+ G +
Sbjct: 80 SMSAGAAHCLALTADGAVWSWGHGGQGRLGHGDAQH-QLLPKKVEAFAGQRVVAVSAGYF 138
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
HS+ALT G ++SWG G+ G Q + + + L G + ++ G H+ ++
Sbjct: 139 HSLALTADGRVWSWGYGRDGRLGHGNTQ-HQLLPKKLEGLAGQRVVAVSAGIAHSLAIT 196
Score = 61.7 bits (143), Expect = 5e-10
Identities = 34/118 (28%), Positives = 60/118 (50%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G HSLA+ G F+WG + G+LG+ H Q PK ++ + + V+ G H
Sbjct: 237 VSAGSGHSLALTADGAVFTWGFGAHGRLGHGDEQH-QLLPKKIEAFVGQRAVAVSAGPRH 295
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
S+A+T G + SWG G+ G Q + + +L G + ++ G++H+ +S
Sbjct: 296 SLAITADGAVMSWGHGHRGKLGHGDEQNQLLP-NKVEALAGRRVVAVSAGSDHSIAIS 352
Score = 61.3 bits (142), Expect = 7e-10
Identities = 34/117 (29%), Positives = 59/117 (50%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G +HSLAI G SWG G+LG+ Q P V+ LA + V+ V+ G+ H
Sbjct: 289 VSAGPRHSLAITADGAVMSWGHGHRGKLGHG-DEQNQLLPNKVEALAGRRVVAVSAGSDH 347
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL 610
S+A++ G ++SWG +G+ G Q + + + G + ++ G H+ +
Sbjct: 348 SIAISADGAVWSWGDGDFGKLGHGDEQNQLLPTKK-EAFAGQRVVAVSAGEYHSLAI 403
Score = 60.9 bits (141), Expect = 1e-09
Identities = 31/82 (37%), Positives = 46/82 (56%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ GL+HS A+ G +SWG + GQLG+ Q PK V+ A + V+ V+ GAYH
Sbjct: 550 VSAGLRHSGALTADGALWSWGEGAYGQLGHG-DEQRQLLPKKVEAFAGQRVVAVSAGAYH 608
Query: 440 SVALTNSGDLYSWGANSYGQCG 505
S+A++ G +WG G G
Sbjct: 609 SLAISADGAFLTWGQGEDGCLG 630
Score = 34.3 bits (75), Expect = 0.094
Identities = 18/73 (24%), Positives = 35/73 (47%)
Frame = +2
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIA 574
L + + ++ GA H +ALT G ++SWG G+ G Q + + + + G +
Sbjct: 73 LGGERAVSMSAGAAHCLALTADGAVWSWGHGGQGRLGHGDAQ-HQLLPKKVEAFAGQRVV 131
Query: 575 LITCGNNHTFVLS 613
++ G H+ L+
Sbjct: 132 AVSAGYFHSLALT 144
Score = 32.7 bits (71), Expect = 0.29
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
PT + + AV+AGE+HSL + G ++S G GQLG
Sbjct: 379 PTKKEAFAGQRVVAVSAGEYHSLAIIADGAVWSWGFGYHGQLG 421
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVK 391
++ G HSLAI G +WG G LG+ Q PK V+
Sbjct: 602 VSAGAYHSLAISADGAFLTWGQGEDGCLGHGEDLSDQLLPKKVE 645
>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 950
Score = 68.5 bits (160), Expect = 5e-12
Identities = 39/122 (31%), Positives = 63/122 (51%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++CG +HS + E G +S+G GQLG+ A PK ++GL + +ACG+
Sbjct: 40 LSCGDEHSAVVTESGHLYSFGCGGDGQLGHG-DAEDSHVPKIIEGLDVQKYKHLACGSDF 98
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
S A+T +G+LY+WG+ GQ GL T H+ + +++CG H V++
Sbjct: 99 SAAITENGELYTWGSCGEGQNGLG-EDTEIPTRLHLHG----KVRMVSCGYYHMAVVTGL 153
Query: 620 RC 625
C
Sbjct: 154 TC 155
Score = 50.0 bits (114), Expect = 2e-06
Identities = 26/121 (21%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Frame = +2
Query: 263 ACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHS 442
ACG + + + + G +++G + GQLG + P+ + V+CG +
Sbjct: 375 ACGAEFTAVVTKNGSVYTFGQGNQGQLGLGSSMMETEFPERIPLFEKVKARTVSCGESFT 434
Query: 443 VALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+T G+LY++G +G+ GL + + + + + ++TCG H V ++
Sbjct: 435 AVITKHGNLYTFGDGRHGKLGLGDECFSNTFKPEKVKRFNNFTVKMVTCGGCHMLVAAER 494
Query: 620 R 622
+
Sbjct: 495 K 495
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/53 (33%), Positives = 30/53 (56%)
Frame = +3
Query: 75 WKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
W D + ++ G+ HS ++ SGHLYS G GQLG ++++ P ++E
Sbjct: 31 WIRDDAVVNLSCGDEHSAVVTESGHLYSFGCGGDGQLG-HGDAEDSHVPKIIE 82
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +2
Query: 374 KPKFVKGLATK------NVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
K +F LA K V+ ++CG HS +T SG LYS+G GQ G
Sbjct: 19 KTRFADNLANKFWIRDDAVVNLSCGDEHSAVVTESGHLYSFGCGGDGQLG 68
>SB_32347| Best HMM Match : RCC1 (HMM E-Value=0.00072)
Length = 677
Score = 67.3 bits (157), Expect = 1e-11
Identities = 41/124 (33%), Positives = 65/124 (52%)
Frame = +2
Query: 242 RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQV 421
R+ ++ACG++H+LA+ D +GQ + H +P +V L+ K I V
Sbjct: 26 RIKVLSVACGIEHTLALCR---------DGLGQ--GDTQQHT--RPVYVTELSDKKCIAV 72
Query: 422 ACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
CG YHS+AL+ +YSWG +GQ GL+ + H++SL G + + G +HT
Sbjct: 73 VCGHYHSLALSADQQVYSWGWGVHGQLGLDSIEDALLP-SHVTSLSGAFVTQLAAGYSHT 131
Query: 602 FVLS 613
VL+
Sbjct: 132 AVLT 135
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Frame = +2
Query: 377 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCH---LQHI 547
P V+ L V + GA SVA+ +G ++ WG + GQ + Y +K + + ++
Sbjct: 298 PTVVQKLNESFVATASVGAEFSVAMDATGQVWVWGRSDSGQQNIYKYNDKKGNNNIINNM 357
Query: 548 SSLIGVPIALIT 583
+S I + IA T
Sbjct: 358 NSNISISIATET 369
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = +3
Query: 99 AVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESD 206
AV G +HSL LS +YS G GQLG + D
Sbjct: 71 AVVCGHYHSLALSADQQVYSWGWGVHGQLGLDSIED 106
>SB_55819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2408
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/115 (33%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSM-GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
I CG Q S+ + G+ FS+G + + GQ L KP+ ++ LA+ + V GA
Sbjct: 1763 ICCGTQFSVVLTNDGRVFSFGQERLTGQPEGRL--RGPQKPQQIQALASHFIDDVCVGAE 1820
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
H +ALT++G+++ WG+N GQ GL + + I L G I I+ G NH+
Sbjct: 1821 HVLALTSTGEVWGWGSNVDGQLGLG-HSNAQREPCVIPDLKGKNIRQISAGRNHS 1874
Score = 49.6 bits (113), Expect = 2e-06
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQP-FSWGSDSMGQLGNNLGA-HAQDKPKFVKGLATKNVIQ 418
+H+ +ACGL H+L + G +++G G+LG LG+ A+ P+ + LA +
Sbjct: 1705 VHSFQVACGLNHTLVLSADGNTVWAFGDGDYGKLG--LGSCTAKTSPQAIDVLAGIGCKK 1762
Query: 419 VACGAYHSVALTNSGDLYSWG 481
+ CG SV LTN G ++S+G
Sbjct: 1763 ICCGTQFSVVLTNDGRVFSFG 1783
Score = 48.4 bits (110), Expect = 5e-06
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLG-AHAQDKPKFVKGLATKNVIQVACGAY 436
+ G +H LA+ G+ + WGS+ GQLG LG ++AQ +P + L KN+ Q++ G
Sbjct: 1815 VCVGAEHVLALTSTGEVWGWGSNVDGQLG--LGHSNAQREPCVIPDLKGKNIRQISAGRN 1872
Query: 437 HSVALT 454
HS A T
Sbjct: 1873 HSAAWT 1878
Score = 40.7 bits (91), Expect = 0.001
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG--NNLGAHAQDKPKFVKGLATKNVIQVACGA 433
+ CG + + G + G S G+LG N+ ++G +
Sbjct: 1458 VVCGQNCTFVVQVNGTILACGEGSYGRLGMGNSDDLFTLSPISALQGYVVIQIATSRGSD 1517
Query: 434 YHSVALTNSGDLYSWGANSYGQCG 505
HS+ALT+SG+++SWG YG+ G
Sbjct: 1518 GHSLALTDSGEVFSWGDGDYGKLG 1541
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTN 457
HSLA+ + G+ FSWG G+LG+ + Q +P+ ++ L + V+ + V T
Sbjct: 1519 HSLALTDSGEVFSWGDGDYGKLGHG-NSDRQRRPRQIEALRGEEVVNWTASSSRLVMATT 1577
Query: 458 SG 463
+G
Sbjct: 1578 AG 1579
Score = 33.9 bits (74), Expect = 0.12
Identities = 22/68 (32%), Positives = 33/68 (48%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVET 236
KP + S I V G H L L+++G ++ G+N GQLG S+ + P ++
Sbjct: 1800 KPQQIQALASHFIDDVCVGAEHVLALTSTGEVWGWGSNVDGQLG-LGHSNAQREPCVIPD 1858
Query: 237 FKDCTIRQ 260
K IRQ
Sbjct: 1859 LKGKNIRQ 1866
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +2
Query: 311 FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANS 490
+ WG GQL + + P K LA+ QV CG + + +G + + G S
Sbjct: 1426 YLWGGGRHGQLAES--GRGVNVPTVTKSLASAQ--QVVCGQNCTFVVQVNGTILACGEGS 1481
Query: 491 YGQCGL 508
YG+ G+
Sbjct: 1482 YGRLGM 1487
>SB_30518| Best HMM Match : FYVE (HMM E-Value=1.2e-18)
Length = 447
Score = 62.5 bits (145), Expect = 3e-10
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Frame = +2
Query: 302 GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWG 481
G FS+G + GQLG + V L+ + +VACG++HS AL G ++ G
Sbjct: 241 GALFSFGENDYGQLGIPEDKLLTSYIQCVSSLSEHKISRVACGSFHSAALAEKGRMFCCG 300
Query: 482 ANSYGQCGLELYQTRKCHLQH-ISSLIGVPIAL----ITCGNNHTFVLSKSRCG 628
N+YGQ G L + H+ + ++ + VP + CG++HT V+++ G
Sbjct: 301 DNTYGQLGAHLNDNQDDHVTYNVAVRVRVPTDFRCVHVACGDSHTAVVTEIEIG 354
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = +3
Query: 84 SDH-IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
S+H I VA G FHS L+ G ++ CG+N GQLG
Sbjct: 273 SEHKISRVACGSFHSAALAEKGRMFCCGDNTYGQLG 308
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-----NVIQVA 424
+ACG HS A+ E G+ F G ++ GQLG +L + D + + + + VA
Sbjct: 280 VACGSFHSAALAEKGRMFCCGDNTYGQLGAHLNDNQDDHVTYNVAVRVRVPTDFRCVHVA 339
Query: 425 CGAYHSVALT 454
CG H+ +T
Sbjct: 340 CGDSHTAVVT 349
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/63 (33%), Positives = 34/63 (53%)
Frame = +2
Query: 452 TNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKSRCGF 631
T G L+S+G N YGQ G+ + ++Q +SSL I+ + CG+ H+ L++ F
Sbjct: 238 TVEGALFSFGENDYGQLGIPEDKLLTSYIQCVSSLSEHKISRVACGSFHSAALAEKGRMF 297
Query: 632 WMG 640
G
Sbjct: 298 CCG 300
>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
Length = 1362
Score = 62.5 bits (145), Expect = 3e-10
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPK--FVKGLATKNVIQVACGA 433
+A G H++ + + F++G ++ GQLG +D K F +G K V+ +ACG
Sbjct: 41 VALGTAHTVLLTFNHEVFAFGDNNFGQLGFGDRNRRRDPAKLPFFEG---KRVVDIACGG 97
Query: 434 YHSVALTNSGDLYSWGANSYGQCGL 508
HSV L ++G+ Y+WG +S GQCG+
Sbjct: 98 QHSVVLLDNGETYAWGDSSSGQCGI 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 27/65 (41%), Positives = 37/65 (56%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+IACG H+LA+ G ++WG Q G+ +PK V+ L K VI + CGAY
Sbjct: 170 SIACGDCHTLALSSRGTVWAWGLGC--QTGHGSLNSIVSRPKMVEALKDKEVIGIICGAY 227
Query: 437 HSVAL 451
HS+AL
Sbjct: 228 HSIAL 232
Score = 43.2 bits (97), Expect = 2e-04
Identities = 36/142 (25%), Positives = 59/142 (41%), Gaps = 25/142 (17%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-----NNLGAHAQDKPKFVKGLATKNVI--- 415
IACG QHS+ + + G+ ++WG S GQ G NN A K F + + +
Sbjct: 93 IACGGQHSVVLLDNGETYAWGDSSSGQCGIGKCDNNSAVDAPTKVAFTPEMKSPQSVFHL 152
Query: 416 -----------------QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH 544
+ACG H++AL++ G +++WG Q G + +
Sbjct: 153 SEEKHETQPQATDVKIKSIACGDCHTLALSSRGTVWAWGLGC--QTGHGSLNSIVSRPKM 210
Query: 545 ISSLIGVPIALITCGNNHTFVL 610
+ +L + I CG H+ L
Sbjct: 211 VEALKDKEVIGIICGAYHSIAL 232
Score = 37.9 bits (84), Expect = 0.008
Identities = 22/79 (27%), Positives = 39/79 (49%)
Frame = +2
Query: 374 KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISS 553
+PK + +VA G H+V LT + +++++G N++GQ G + R+ +
Sbjct: 26 EPKISPLSLPHGISKVALGTAHTVLLTFNHEVFAFGDNNFGQLGFG-DRNRRRDPAKLPF 84
Query: 554 LIGVPIALITCGNNHTFVL 610
G + I CG H+ VL
Sbjct: 85 FEGKRVVDIACGGQHSVVL 103
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 356 GAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYS 475
G+ + P V+ L++ +I+VA G +HS+ALT +S
Sbjct: 555 GSQDRSVPCLVEDLSSTGIIKVAAGTFHSLALTVYSQCFS 594
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG---RQTESDNGKNP 221
+P +S I VA G H++ L+ + +++ G+N+ GQLG R D K P
Sbjct: 26 EPKISPLSLPHGISKVALGTAHTVLLTFNHEVFAFGDNNFGQLGFGDRNRRRDPAKLP 83
>SB_18907| Best HMM Match : RCC1 (HMM E-Value=0)
Length = 444
Score = 58.0 bits (134), Expect = 7e-09
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Frame = +2
Query: 296 EWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYS 475
E GQ + G +GQLG + KP L ++QV G H+VAL+ G +Y+
Sbjct: 47 ESGQALTLGQGDVGQLGLGPDTLERKKPAVPIDLEGVPIVQVESGGMHTVALSKDGKVYT 106
Query: 476 WGANSYGQCGLELYQTRKCHLQH--ISSLIGVPIALITCGNNHTFVLS 613
WG N G G E + Q +S V I +++ G++HT LS
Sbjct: 107 WGCNDDGALGRETTSEGEEEFQPGVVSMPDDVNIVMVSAGDSHTAALS 154
Score = 58.0 bits (134), Expect = 7e-09
Identities = 37/131 (28%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATKNVIQVACGA 433
+ G H++A+ + G+ ++WG + G LG + +++ P V N++ V+ G
Sbjct: 88 VESGGMHTVALSKDGKVYTWGCNDDGALGRETTSEGEEEFQPGVVSMPDDVNIVMVSAGD 147
Query: 434 YHSVALTNSGDLYSWGA--NSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFV 607
H+ AL++ G +Y+WG ++ GQ GL+ +K ++S I I GN+HT
Sbjct: 148 SHTAALSDQGTVYAWGTYRDASGQIGLQPDGVKKKPAVILTS-ESDRIIKIASGNDHTAA 206
Query: 608 LSKSRCGFWMG 640
L+ S F +G
Sbjct: 207 LTTSGNLFTLG 217
Score = 56.0 bits (129), Expect = 3e-08
Identities = 30/83 (36%), Positives = 44/83 (53%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
TIA G H++ D G+ ++ G G+LG GA P + L + + +VACG
Sbjct: 318 TIANGQHHTIVCDPNGKVYALGRADYGRLGLGDGAKETALPAHITSLDNEVIEKVACGEC 377
Query: 437 HSVALTNSGDLYSWGANSYGQCG 505
S A+++ G+LYSWG S Q G
Sbjct: 378 VSFAVSDKGELYSWGMGSCLQLG 400
Score = 46.0 bits (104), Expect = 3e-05
Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 7/125 (5%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQP-FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNV------IQ 418
+ CG + + + G ++WG ++ GQLG P VK L+ N I
Sbjct: 260 VFCGSFATFVVAKTGSDVYAWGLNNYGQLGTG-DVQTWHFPVKVKSLSQLNKSEKDKHIT 318
Query: 419 VACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNH 598
+A G +H++ +G +Y+ G YG+ GL HI+SL I + CG
Sbjct: 319 IANGQHHTIVCDPNGKVYALGRADYGRLGLGDGAKETALPAHITSLDNEVIEKVACGECV 378
Query: 599 TFVLS 613
+F +S
Sbjct: 379 SFAVS 383
Score = 42.3 bits (95), Expect = 4e-04
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 11/99 (11%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGN----------NLGAHAQDKPKFVKGLATKN 409
IA G H+ A+ G F+ G GQLG G +P V+
Sbjct: 197 IASGNDHTAALTTSGNLFTLGCAEQGQLGRVKECFSARGGRRGLAYILEPALVRSKKGLK 256
Query: 410 VIQVACGAYHSVALTNSG-DLYSWGANSYGQCGLELYQT 523
V CG++ + + +G D+Y+WG N+YGQ G QT
Sbjct: 257 FKDVFCGSFATFVVAKTGSDVYAWGLNNYGQLGTGDVQT 295
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/48 (41%), Positives = 29/48 (60%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTE 200
KP + ESD I +A+G H+ L+ SG+L++ G + GQLGR E
Sbjct: 182 KPAVILTSESDRIIKIASGNDHTAALTTSGNLFTLGCAEQGQLGRVKE 229
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Frame = +2
Query: 212 KESSFSGNI*RLHNTTI---ACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPK 382
KE++ +I L N I ACG S A+ + G+ +SWG S QLGN P
Sbjct: 353 KETALPAHITSLDNEVIEKVACGECVSFAVSDKGELYSWGMGSCLQLGNGNDEDDVTTPA 412
Query: 383 FVKG----LATKNVIQVACGAYHSVAL 451
V+G T V+ V+ G H+V L
Sbjct: 413 KVQGKNLNSETHRVLGVSAGGQHTVIL 439
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/51 (37%), Positives = 28/51 (54%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
+++ I+ VA GE S +S+ G LYS G QLG + D+ PA V+
Sbjct: 365 DNEVIEKVACGECVSFAVSDKGELYSWGMGSCLQLGNGNDEDDVTTPAKVQ 415
>SB_46796| Best HMM Match : RCC1 (HMM E-Value=3e-14)
Length = 350
Score = 56.4 bits (130), Expect = 2e-08
Identities = 44/158 (27%), Positives = 70/158 (44%), Gaps = 25/158 (15%)
Frame = +2
Query: 242 RLHNTTIA-CGLQHSLAIDEWGQPFSWGSDSMGQLGN-NLGAHAQDKPKFVKGLATKNVI 415
++HN A CG H+L + + G F +G + +GQ+G + + P + K V
Sbjct: 26 KMHNIVQASCGRGHTLILTDAGLVFGFGDNKLGQIGQGHQKPTSLPCPLQIMHPTDKKVT 85
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLE-----LYQTRKCHLQ------------- 541
+V CGA S+ L +GD++S+G+ YGQ G + + K Q
Sbjct: 86 KVCCGAEFSMLLDENGDIFSFGSPEYGQLGHNTDGQYIVSSNKMGFQCEVLPRRLVVFVE 145
Query: 542 -----HISSLIGVPIALITCGNNHTFVLSKSRCGFWMG 640
++ + GV I + CGNNHT L + F G
Sbjct: 146 RNKDGFVNHIEGVKIKDVVCGNNHTMALDEQGRVFTWG 183
Score = 52.8 bits (121), Expect = 3e-07
Identities = 40/153 (26%), Positives = 69/153 (45%), Gaps = 26/153 (16%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNN-----------LGAHAQDKPK------ 382
T + CG + S+ +DE G FS+GS GQLG+N +G + P+
Sbjct: 85 TKVCCGAEFSMLLDENGDIFSFGSPEYGQLGHNTDGQYIVSSNKMGFQCEVLPRRLVVFV 144
Query: 383 ------FVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH 544
FV + + V CG H++AL G +++WG YG+ G + Q + H+
Sbjct: 145 ERNKDGFVNHIEGVKIKDVVCGNNHTMALDEQGRVFTWGFGGYGRLGHQ--QPKDEHVPR 202
Query: 545 ISSLI---GVPIALITCGNNHTFVLSKSRCGFW 634
+ + G P ++I G+ ++ + + FW
Sbjct: 203 LLTFFNTKGNP-SVIFAGSTYSMAVCMGQLYFW 234
Score = 46.8 bits (106), Expect = 2e-05
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-NVIQVACGAY 436
+ CG H++A+DE G+ F+WG G+LG+ + P+ + TK N + G+
Sbjct: 163 VVCGNNHTMALDEQGRVFTWGFGGYGRLGHQ-QPKDEHVPRLLTFFNTKGNPSVIFAGST 221
Query: 437 HSVALTNSGDLYSWG 481
+S+A+ G LY WG
Sbjct: 222 YSMAVC-MGQLYFWG 235
Score = 46.4 bits (105), Expect = 2e-05
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 2/97 (2%)
Frame = +2
Query: 335 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGL-- 508
GQLG+ D PK + L N++Q +CG H++ LT++G ++ +G N GQ G
Sbjct: 6 GQLGHGTTERC-DVPKVIDRLKMHNIVQASCGRGHTLILTDAGLVFGFGDNKLGQIGQGH 64
Query: 509 ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+ + C LQ I + + CG + +L ++
Sbjct: 65 QKPTSLPCPLQ-IMHPTDKKVTKVCCGAEFSMLLDEN 100
Score = 36.3 bits (80), Expect = 0.023
Identities = 32/125 (25%), Positives = 53/125 (42%), Gaps = 4/125 (3%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
+ I G +S+A+ GQ + WG A PK V+ L+ V V C
Sbjct: 214 SVIFAGSTYSMAVC-MGQLYFWGQTKQS-------GEAAMYPKPVQDLSGWQVRSVGCSK 265
Query: 434 YHSVALTNSGDLYSWGAN-SYGQCGLELY---QTRKCHLQHISSLIGVPIALITCGNNHT 601
S+ + + SWG + +YG+ G L Q + + + L + + +TCG HT
Sbjct: 266 -SSIVIAADDSVVSWGPSPTYGELGYGLKKGGQKSSTNPKIVEPLEDIYVHSVTCGMGHT 324
Query: 602 FVLSK 616
++K
Sbjct: 325 LFIAK 329
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = +3
Query: 54 IKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR 191
+ + + K + +QA + G H+L L+++G ++ G+N +GQ+G+
Sbjct: 18 VPKVIDRLKMHNIVQA-SCGRGHTLILTDAGLVFGFGDNKLGQIGQ 62
>SB_25012| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 436
Score = 56.4 bits (130), Expect = 2e-08
Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 16/86 (18%)
Frame = +2
Query: 296 EWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH------------ 439
E G+ F+WG + QLGN + P + KN+ Q+ACG++H
Sbjct: 111 ENGEVFTWGHNGYSQLGNG-NTNQGLYPSLLTSFQGKNITQLACGSHHTLVLNDEGEILC 169
Query: 440 ----SVALTNSGDLYSWGANSYGQCG 505
S+AL+++G +YSWGANSYGQ G
Sbjct: 170 GYAHSLALSDAGCIYSWGANSYGQLG 195
Score = 52.0 bits (119), Expect = 4e-07
Identities = 32/103 (31%), Positives = 45/103 (43%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I CG HSLA+ + G +SWG++S GQLG AH K I + +
Sbjct: 167 ILCGYAHSLALSDAGCIYSWGANSYGQLGTGNKAHLVTPTKIAVDKGRFVEIGASHYIHM 226
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVP 568
S A T +G +Y WG GQ +TR + + + P
Sbjct: 227 SAAATATGKVYMWG-QCKGQAVSSPMETRFSRIDTVFTCFATP 268
Score = 35.1 bits (77), Expect = 0.054
Identities = 16/52 (30%), Positives = 29/52 (55%)
Frame = +2
Query: 458 SGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
+G++++WG N Y Q G + + ++S G I + CG++HT VL+
Sbjct: 112 NGEVFTWGHNGYSQLG-NGNTNQGLYPSLLTSFQGKNITQLACGSHHTLVLN 162
Score = 33.1 bits (72), Expect = 0.22
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+ G HSL LS++G +YS G N GQLG
Sbjct: 167 ILCGYAHSLALSDAGCIYSWGANSYGQLG 195
>SB_45009| Best HMM Match : RCC1 (HMM E-Value=7.6e-21)
Length = 595
Score = 54.4 bits (125), Expect = 8e-08
Identities = 32/120 (26%), Positives = 59/120 (49%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T CG ++S+ + + G + GS G LG+ + + +PK ++GL + +V V+CG
Sbjct: 139 TRACCGDKYSVFVTDNGIVMTCGSSDTGCLGHGDWS-STPRPKLIEGLLSVDVTAVSCGP 197
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
+H + + G +++WG + G+ GL + Q V I + CG + T L+
Sbjct: 198 HHVAVVCSEGLVFTWGKGADGRLGLGNEDDQCVPCQVTMEDANVSIRDVRCGLDGTMFLT 257
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/127 (25%), Positives = 60/127 (47%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
++ G H + ++WG +S GQLG + +DKP V L K + + CG +
Sbjct: 89 VSVGQSHVAVVTLERAAYTWGDNSRGQLGQGDLVN-RDKPTLVDTLKGKAITRACCGDKY 147
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
SV +T++G + + G++ G G + + + I L+ V + ++CG +H V+
Sbjct: 148 SVFVTDNGIVMTCGSSDTGCLGHGDWSSTP-RPKLIEGLLSVDVTAVSCGPHHVAVVCSE 206
Query: 620 RCGFWMG 640
F G
Sbjct: 207 GLVFTWG 213
Score = 49.2 bits (112), Expect = 3e-06
Identities = 29/75 (38%), Positives = 38/75 (50%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+A G HS + E G + GS+ GQLG+ +D P VK L + V V CG
Sbjct: 314 MALGPTHSAVLVEPGHVHTLGSNQDGQLGSG-NTKPRDAPASVKQLEDQTVTMVFCGYGF 372
Query: 440 SVALTNSGDLYSWGA 484
+VA TN LY WG+
Sbjct: 373 TVAGTNDNTLYFWGS 387
Score = 40.3 bits (90), Expect = 0.001
Identities = 30/123 (24%), Positives = 53/123 (43%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T ++CG H + G F+WG + G+LG + A ++ V CG
Sbjct: 191 TAVSCGPHHVAVVCSEGLVFTWGKGADGRLGLGNEDDQCVPCQVTMEDANVSIRDVRCGL 250
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
++ LT++G L + G+N+ + GL R+ L + +L+ +T LS
Sbjct: 251 DGTMFLTDTGALLACGSNANNKLGL---NNRQGFLMQMKNLLNKDPVKVTTTPTAVKALS 307
Query: 614 KSR 622
+ R
Sbjct: 308 RYR 310
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 15/129 (11%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG--NNLGAHAQDK-------------PKFVKG 394
+ CGL ++ + + G + GS++ +LG N G Q K P VK
Sbjct: 246 VRCGLDGTMFLTDTGALLACGSNANNKLGLNNRQGFLMQMKNLLNKDPVKVTTTPTAVKA 305
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIA 574
L+ V+ +A G HS L G +++ G+N GQ G + R + L +
Sbjct: 306 LSRYRVVDMALGPTHSAVLVEPGHVHTLGSNQDGQLGSGNTKPRDAPAS-VKQLEDQTVT 364
Query: 575 LITCGNNHT 601
++ CG T
Sbjct: 365 MVFCGYGFT 373
Score = 35.5 bits (78), Expect = 0.041
Identities = 18/59 (30%), Positives = 33/59 (55%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
KPTL + I G+ +S++++++G + +CG++D G LG S + P L+E
Sbjct: 126 KPTLVDTLKGKAITRACCGDKYSVFVTDNGIVMTCGSSDTGCLGHGDWSSTPR-PKLIE 183
Score = 35.1 bits (77), Expect = 0.054
Identities = 21/65 (32%), Positives = 30/65 (46%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETF 239
PT K + +A G HS L GH+++ G+N GQLG PA V+
Sbjct: 300 PTAVKALSRYRVVDMALGPTHSAVLVEPGHVHTLGSNQDGQLGSGNTKPRDA-PASVKQL 358
Query: 240 KDCTI 254
+D T+
Sbjct: 359 EDQTV 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFK 242
V+ G+ H ++ Y+ G+N GQLG Q + N P LV+T K
Sbjct: 89 VSVGQSHVAVVTLERAAYTWGDNSRGQLG-QGDLVNRDKPTLVDTLK 134
>SB_20583| Best HMM Match : RCC1 (HMM E-Value=6.2e-08)
Length = 970
Score = 51.6 bits (118), Expect = 6e-07
Identities = 37/108 (34%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Frame = +2
Query: 257 TIACGLQHSLAIDE---W------GQPFSWGSDSMGQLGNNLGAHAQDKPKFVK------ 391
++ACG H++ + E W G +SWG G LG+ + +P +VK
Sbjct: 164 SMACGAYHTVLLAEGYGWLGNLSSGVAYSWGRGGNGALGHGT-LLSLARPSYVKRLYHGD 222
Query: 392 --GLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRK 529
G K V QVA G HS LT G +Y+ G+N YGQ G +T K
Sbjct: 223 KDGKDAKTVSQVAAGRAHSAFLTKDGCVYTCGSNQYGQLGYYTKETYK 270
Score = 45.6 bits (103), Expect = 4e-05
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = +2
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
L +K ++Q+ACGA+H ALT+SG+L + G +GQ G
Sbjct: 488 LDSKIIVQIACGAFHVAALTDSGELLTCGTGKHGQLG 524
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +3
Query: 78 KESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
K++ + VAAG HS +L+ G +Y+CG+N GQLG T+ P V+
Sbjct: 226 KDAKTVSQVAAGRAHSAFLTKDGCVYTCGSNQYGQLGYYTKETYKLLPTKVD 277
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I G ++ AI G ++WG + P VKG+ V+ +ACGAYH
Sbjct: 116 IGAGQHYACAIMTSGWMYAWGLSGAAKDETKF----VKTPTVVKGVDNARVMSMACGAYH 171
Query: 440 SVALT---------NSGDLYSWGANSYGQCG 505
+V L +SG YSWG G G
Sbjct: 172 TVLLAEGYGWLGNLSSGVAYSWGRGGNGALG 202
Score = 34.7 bits (76), Expect = 0.071
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+S I +A G FH L++SG L +CG GQLG
Sbjct: 489 DSKIIVQIACGAFHVAALTDSGELLTCGTGKHGQLG 524
Score = 31.1 bits (67), Expect = 0.88
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Frame = +2
Query: 224 FSGNI*RLHN-------TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPK 382
FSG++ LH IACG H A+ + G+ + G+ GQLG+ H + +
Sbjct: 477 FSGDVVLLHRELDSKIIVQIACGAFHVAALTDSGELLTCGTGKHGQLGH---THMRSSDE 533
Query: 383 FVKGLATK--NVIQVACG 430
F L +K V+CG
Sbjct: 534 FQTVLLSKVERFASVSCG 551
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 377 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLE 511
P+ V+G T+ + + H+ T++G +WG + G G+E
Sbjct: 43 PQCVRG--TRQISSFSMSRTHAAVATDAGKALTWGYSPQGALGIE 85
>SB_29134| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 42.3 bits (95), Expect = 4e-04
Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Frame = +3
Query: 42 TDLVIKPTL-SKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
TD VIKP + S WK D + + G H+ +++S LY+CG N+ GQLG
Sbjct: 72 TDDVIKPAVHSNWK--DDVLCITGGGGHTAMITDSRELYTCGWNNRGQLG 119
Score = 37.9 bits (84), Expect = 0.008
Identities = 31/99 (31%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Frame = +2
Query: 320 GSDSMGQLGNNLGAHAQDKPK-FVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYG 496
G++S GQL H D K V +V+ + G H+ +T+S +LY+ G N+ G
Sbjct: 60 GANSYGQLACG---HTDDVIKPAVHSNWKDDVLCITGGGGHTAMITDSRELYTCGWNNRG 116
Query: 497 QCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
Q GL + L + LI P+ ++CG NHT ++
Sbjct: 117 QLGLG-DTINRIELHRV--LIP-PVKHVSCGWNHTLAIT 151
Score = 29.9 bits (64), Expect = 2.0
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 461 GDLYSWGANSYGQCGLELYQTRKCHLQHIS-SLIGVPIALITCGNNHTFVLS 613
G ++SWG N GQ G +++KC + S G I G +HT +L+
Sbjct: 297 GSVWSWGDNKKGQLGCSRERSKKCIPFPVQVSFEGCRGKSIAVGLHHTVLLT 348
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/49 (44%), Positives = 29/49 (59%)
Frame = +3
Query: 99 AVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKD 245
+VA G H+L L +G LYS G+N GQLG E + + P LVE+ D
Sbjct: 587 SVAMGTSHTLVLLQNGKLYSFGSNSFGQLGYVREGVS-RFPQLVESLND 634
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/68 (35%), Positives = 41/68 (60%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
+++A G H+L + + G+ +S+GS+S GQLG + P+ V+ L +V VACG
Sbjct: 586 SSVAMGTSHTLVLLQNGKLYSFGSNSFGQLG-YVREGVSRFPQLVESL--NDVSYVACGD 642
Query: 434 YHSVALTN 457
SVA+++
Sbjct: 643 TFSVAVSS 650
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/100 (25%), Positives = 49/100 (49%)
Frame = +2
Query: 314 SWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSY 493
++GS + G LG+ + + K V+ L V ++CG+ H +A+T ++++WG
Sbjct: 444 TFGSGTYGCLGHGTTNYVS-QAKIVEDLLGFEVEDISCGSSHIMAVTADHEVFAWGRGDN 502
Query: 494 GQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
G+ G Q + IS G+ + CG + +F ++
Sbjct: 503 GRLGTG-SQQEYWSPKAISLPEGMRARSVHCGVDCSFAIT 541
Score = 37.9 bits (84), Expect = 0.008
Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 5/122 (4%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+CG H +A+ + F+WG G+LG PK + V CG
Sbjct: 478 ISCGSSHIMAVTADHEVFAWGRGDNGRLGTG-SQQEYWSPKAISLPEGMRARSVHCGVDC 536
Query: 440 SVALTNSGDLYSWGANSYGQCGLE-----LYQTRKCHLQHISSLIGVPIALITCGNNHTF 604
S A+T L + G+N + L+ + + + V + + G +HT
Sbjct: 537 SFAITLENKLLACGSNRCNKLALDNEDGPVEEVAVLRQVSVPDFNSVGTSSVAMGTSHTL 596
Query: 605 VL 610
VL
Sbjct: 597 VL 598
Score = 37.9 bits (84), Expect = 0.008
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQD----KPKFVKGLATKNVIQV 421
++ CG+ S AI + + GS+ +L +N ++ + V + V
Sbjct: 529 SVHCGVDCSFAITLENKLLACGSNRCNKLALDNEDGPVEEVAVLRQVSVPDFNSVGTSSV 588
Query: 422 ACGAYHSVALTNSGDLYSWGANSYGQCG 505
A G H++ L +G LYS+G+NS+GQ G
Sbjct: 589 AMGTSHTLVLLQNGKLYSFGSNSFGQLG 616
>SB_23006| Best HMM Match : RCC1 (HMM E-Value=0.014)
Length = 52
Score = 32.3 bits (70), Expect = 0.38
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 335 GQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYS 475
G+LG G+ P V+ L V +V CG+ SVALT SG +Y+
Sbjct: 6 GKLGRG-GSDGCKIPMKVESLIGLGVSKVECGSQFSVALTRSGAVYT 51
>SB_18357| Best HMM Match : Phage_integrase (HMM E-Value=0.0063)
Length = 683
Score = 31.9 bits (69), Expect = 0.50
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = +2
Query: 587 GNNHTFVL-SKSRCGFWMG*KHSWDNWVFK 673
GN HT + SKS W+G WD WVF+
Sbjct: 380 GNKHTLLFPSKSSNAAWIGKPLQWDLWVFR 409
>SB_5935| Best HMM Match : PvlArgDC (HMM E-Value=2.6)
Length = 363
Score = 30.3 bits (65), Expect = 1.5
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQV-ACGAY 436
IA + + E G+ SW DS+ + + L AQ P+ LA ++ + AC Y
Sbjct: 295 IAASSIRASVLTESGKVASWIDDSLAHVASKLEHSAQSFPE----LANDKIMSIYACDLY 350
Query: 437 HSVALTNSGDLY 472
+ A T SG LY
Sbjct: 351 -TCAQTTSGALY 361
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)
Frame = +3
Query: 57 KPTLSKWK------ESDHIQAVAAGEFHSLYLSNS----GHLYSC-GNNDVGQLGRQTE 200
KPT++ WK + H++ + G +H+LY+ S Y C NDVG R E
Sbjct: 1537 KPTVTWWKNGKELRDGKHVEIRSGGTYHTLYILRSEEEDAGSYKCLARNDVGSAERLFE 1595
>SB_25936| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 164
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -3
Query: 423 ATCITFLVANPLTNLGLS*A*APRLLPSCPILSEPQLKGCPHSSIA 286
A C+TF+V P+T ++ R+ S + +P C H+S+A
Sbjct: 37 AICVTFIVFQPMTAQDITAVTQRRVRKSVTLDGDPLESTCRHASLA 82
>SB_8101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 464
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/53 (30%), Positives = 28/53 (52%)
Frame = +2
Query: 326 DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGA 484
D+ L N + H Q + K+ +GL+ + + VA G + AL+++G GA
Sbjct: 246 DTQAVLDNEMTHHRQVRKKYKRGLSVTHAVSVASGV-AAGALSSAGGSLGSGA 297
>SB_12877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 321
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +2
Query: 587 GNNHTFVL-SKSRCGFWMG*KHSWDNWVFK 673
GN HT + SKS W+ WD WVF+
Sbjct: 244 GNKHTLLFPSKSSNAAWIEKPLQWDLWVFR 273
>SB_26949| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 92
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +2
Query: 404 KNVIQVACGAYHSVALTNSGDLYSWGANS 490
K VI+ AY SGDL SWG NS
Sbjct: 58 KAVIEANVSAYQRRRRLRSGDLPSWGKNS 86
>SB_59616| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2735
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 458 SGDLYSWGANSYGQCGLELYQTRKCHLQHISSLI 559
SG L+ W +S G Y T KCH + ++ +
Sbjct: 2542 SGQLFLWQVSSTGTGSSNPYMTLKCHNKQMNDFV 2575
>SB_31129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 160
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 410 VIQVACGAYHSVALTNSGDLYSWGA 484
V+ V CG +VA TN LY WG+
Sbjct: 88 VLMVFCGYGFTVAGTNDNTLYFWGS 112
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,181,835
Number of Sequences: 59808
Number of extensions: 497092
Number of successful extensions: 1177
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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