Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060991.seq
         (689 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    26   0.29 
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    26   0.29 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.51 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.7  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     23   3.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   6.3  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    21   8.4  

>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 173
           KE  HI  V  G   S   + +GHL Y CG  D
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGID 35


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 26.2 bits (55), Expect = 0.29
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 78  KESDHIQAVAAGEFHSLYLSNSGHL-YSCGNND 173
           KE  HI  V  G   S   + +GHL Y CG  D
Sbjct: 3   KEKIHINIVVIGHVDSGKSTTTGHLIYKCGGID 35


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -2

Query: 361 SAKVIAKLPHTVRAPTE 311
           +A +++KLP TVR PT+
Sbjct: 527 AANIMSKLPKTVRTPTD 543



 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 165  YHMNINDHC 139
            YH N+N HC
Sbjct: 1679 YHHNVNKHC 1687



 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 319  PTERLSPFIYS*RMLKATCYCRIVQS 242
            PTE   PF+Y+  ++K T     VQ+
Sbjct: 929  PTETGLPFVYTFNVIKLTKTSGTVQA 954


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
            protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 87   DHIQAVAAGEFHSLYLSNSGHLYSCGN 167
            D IQA A+ + + + +   GH Y CG+
Sbjct: 1049 DLIQAEAS-QIYDMLVYEGGHFYVCGD 1074


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 380 KFVKGLATKNVIQVACGAYHSVALTN 457
           + +KG A  ++ +V+C   HS  LTN
Sbjct: 410 RILKGPANPDIFRVSCATEHS-QLTN 434


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 380 KFVKGLATKNVIQVACGAYHSVALTN 457
           + +KG A  ++ +V+C   HS  LTN
Sbjct: 116 RILKGPANPDIFRVSCATEHS-QLTN 140


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -1

Query: 629 NRTWILIAQMYGY 591
           N TW+ IA + GY
Sbjct: 196 NNTWVYIADVEGY 208


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/40 (25%), Positives = 14/40 (35%)
 Frame = +2

Query: 473 SWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGN 592
           +W  N  G CG  +    + H      L  +    I  GN
Sbjct: 114 NWAQNKAGACGSAITTAYRIHADSCDRLWVLDTGTIGIGN 153


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,599
Number of Sequences: 438
Number of extensions: 4326
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)