Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060991.seq
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat... 95 4e-20
At5g12350.1 68418.m01453 zinc finger protein, putative / regulat... 95 5e-20
At1g69710.1 68414.m08022 zinc finger protein, putative / regulat... 83 1e-16
At5g42140.1 68418.m05130 zinc finger protein, putative / regulat... 82 3e-16
At5g16040.1 68418.m01875 regulator of chromosome condensation (R... 82 3e-16
At5g08710.1 68418.m01035 regulator of chromosome condensation (R... 81 9e-16
At3g02510.1 68416.m00239 regulator of chromosome condensation (R... 80 1e-15
At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator... 78 6e-15
At3g02300.1 68416.m00212 regulator of chromosome condensation (R... 77 1e-14
At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical... 75 3e-14
At3g53830.1 68416.m05947 regulator of chromosome condensation (R... 75 6e-14
At3g47660.1 68416.m05188 regulator of chromosome condensation (R... 74 1e-13
At3g23270.1 68416.m02933 regulator of chromosome condensation (R... 72 3e-13
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 71 6e-13
At5g60870.2 68418.m07635 regulator of chromosome condensation (R... 69 2e-12
At5g60870.1 68418.m07636 regulator of chromosome condensation (R... 69 2e-12
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat... 65 5e-11
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat... 65 5e-11
At3g55580.1 68416.m06171 regulator of chromosome condensation (R... 64 1e-10
At1g65920.1 68414.m07480 regulator of chromosome condensation (R... 63 1e-10
At1g19880.1 68414.m02493 regulator of chromosome condensation (R... 62 3e-10
At1g27060.1 68414.m03299 regulator of chromosome condensation (R... 61 8e-10
At5g48330.1 68418.m05970 regulator of chromosome condensation (R... 57 1e-08
At5g11580.1 68418.m01350 UVB-resistance protein-related / regula... 56 2e-08
At3g26100.2 68416.m03250 regulator of chromosome condensation (R... 55 4e-08
At3g26100.1 68416.m03251 regulator of chromosome condensation (R... 55 4e-08
At3g15430.2 68416.m01958 regulator of chromosome condensation (R... 48 8e-06
At3g15430.1 68416.m01957 regulator of chromosome condensation (R... 48 8e-06
At3g55950.1 68416.m06217 protein kinase family protein contains ... 32 0.41
At3g18750.1 68416.m02380 protein kinase family protein contains ... 31 0.54
At4g34090.2 68417.m04836 expressed protein 29 2.9
At4g34090.1 68417.m04837 expressed protein 29 2.9
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti... 29 3.8
At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia l... 29 3.8
At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL... 28 6.7
At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase f... 28 6.7
At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protei... 28 6.7
>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1124
Score = 95.1 bits (226), Expect = 4e-20
Identities = 49/128 (38%), Positives = 76/128 (59%), Gaps = 1/128 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG QH++ + + G+ FSWG +S G+LG+ + ++ Q PK + L T N+ VACG YH
Sbjct: 336 IACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNVQH-PKLIDALNTTNIELVACGEYH 394
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLI-GVPIALITCGNNHTFVLSK 616
S A+T SGDLY+WG +G G + + ++ L+ G+ ++ I CG HT V++
Sbjct: 395 SCAVTLSGDLYTWGKGDFGILG-HGNEVSHWVPKRVNFLMEGIHVSSIACGPYHTAVVTS 453
Query: 617 SRCGFWMG 640
+ F G
Sbjct: 454 AGQLFTFG 461
Score = 64.9 bits (151), Expect = 5e-11
Identities = 41/116 (35%), Positives = 59/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQ-VACGA 433
+ACG ++A+ G ++ GS GQLGN HA K P V G K+ ++ +ACGA
Sbjct: 557 VACGHSLTVALTTSGHVYTMGSPVYGQLGN---PHADGKVPTRVDGKLHKSFVEEIACGA 613
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
YH LT+ ++Y+WG S G+ G R + SL + I CG+N T
Sbjct: 614 YHVAVLTSRTEVYTWGKGSNGRLGHGDADDRNSPTL-VESLKDKQVKSIACGSNFT 668
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/117 (31%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-NVIQVACGAY 436
+ACG HS A+ G ++WG G LG+ + PK V L +V +ACG Y
Sbjct: 388 VACGEYHSCAVTLSGDLYTWGKGDFGILGHG-NEVSHWVPKRVNFLMEGIHVSSIACGPY 446
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLIGVPIALITCGNNHT 601
H+ +T++G L+++G ++G G + RK + + SL G+ CG HT
Sbjct: 447 HTAVVTSAGQLFTFGDGTFGVLG---HGDRKSVFIPREVDSLKGLRTVRAACGVWHT 500
Score = 51.6 bits (118), Expect = 5e-07
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Frame = +2
Query: 293 DEWGQPFSWGSD-SMGQLG---NNLGAHAQDK-----PKFVKGLATKNVIQVACGAYHSV 445
D G F WG G LG + +G+ + K PK ++ +V +ACG H+V
Sbjct: 285 DTLGDVFMWGEGIGEGVLGGGNHRVGSSLEIKMDSLLPKALESTIVLDVQNIACGGQHAV 344
Query: 446 ALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+T G+ +SWG S G+ G + + H + I +L I L+ CG H+ ++ S
Sbjct: 345 LVTKQGESFSWGEESEGRLGHGV-DSNVQHPKLIDALNTTNIELVACGEYHSCAVTLS 401
Score = 51.2 bits (117), Expect = 6e-07
Identities = 42/135 (31%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEW------------GQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
L ACG+ H+ A+ E G+ F+WG +LG+ + P V
Sbjct: 488 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKSRLGHG-DKEPKLVPTCV 546
Query: 389 KGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVP 568
L N QVACG +VALT SG +Y+ G+ YGQ G + K + L
Sbjct: 547 AALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLG-NPHADGKVPTRVDGKLHKSF 605
Query: 569 IALITCGNNHTFVLS 613
+ I CG H VL+
Sbjct: 606 VEEIACGAYHVAVLT 620
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTE 200
G + V P L + +I+ VA GE+HS ++ SG LY+ G D G LG E
Sbjct: 364 GHGVDSNVQHPKLIDALNTTNIELVACGEYHSCAVTLSGDLYTWGKGDFGILGHGNE 420
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
VA G ++ L+ SGH+Y+ G+ GQLG +GK P V+
Sbjct: 557 VACGHSLTVALTTSGHVYTMGSPVYGQLG--NPHADGKVPTRVD 598
>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1062
Score = 94.7 bits (225), Expect = 5e-20
Identities = 48/127 (37%), Positives = 74/127 (58%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG QH++ + + G+ FSWG +S G+LG+ + ++ Q +PK + L T N+ VACG +H
Sbjct: 300 IACGGQHAVLVTKQGESFSWGEESEGRLGHGVDSNIQ-QPKLIDALNTTNIELVACGEFH 358
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
S A+T SGDLY+WG +G G + + L G+ ++ I CG HT V++ +
Sbjct: 359 SCAVTLSGDLYTWGKGDFGVLGHGNEVSHWVPKRVNFLLEGIHVSSIACGPYHTAVVTSA 418
Query: 620 RCGFWMG 640
F G
Sbjct: 419 GQLFTFG 425
Score = 66.9 bits (156), Expect = 1e-11
Identities = 41/116 (35%), Positives = 60/116 (51%), Gaps = 2/116 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQ-VACGA 433
+ACG ++A+ G ++ GS GQLGN+ HA K P V+G K+ ++ +ACGA
Sbjct: 521 VACGHSLTVALTTSGHVYTMGSPVYGQLGNS---HADGKTPNRVEGKLHKSFVEEIACGA 577
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
YH LT+ ++Y+WG S G+ G R + SL + I CG N T
Sbjct: 578 YHVAVLTSRTEVYTWGKGSNGRLGHGDVDDRNSPTL-VESLKDKQVKSIACGTNFT 632
Score = 56.0 bits (129), Expect = 2e-08
Identities = 36/117 (30%), Positives = 58/117 (49%), Gaps = 3/117 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATK-NVIQVACGAY 436
+ACG HS A+ G ++WG G LG+ + PK V L +V +ACG Y
Sbjct: 352 VACGEFHSCAVTLSGDLYTWGKGDFGVLGHG-NEVSHWVPKRVNFLLEGIHVSSIACGPY 410
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLIGVPIALITCGNNHT 601
H+ +T++G L+++G ++G G + +K + + SL G+ CG HT
Sbjct: 411 HTAVVTSAGQLFTFGDGTFGVLG---HGDKKSVFIPREVDSLKGLRTVRAACGVWHT 464
Score = 53.6 bits (123), Expect = 1e-07
Identities = 43/135 (31%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEW------------GQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
L ACG+ H+ A+ E G+ F+WG G+LG+ + P V
Sbjct: 452 LRTVRAACGVWHTAAVVEVMVGSSSSSNCSSGKLFTWGDGDKGRLGHG-NKEPKLVPTCV 510
Query: 389 KGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVP 568
L N QVACG +VALT SG +Y+ G+ YGQ G + K + L
Sbjct: 511 AALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLG-NSHADGKTPNRVEGKLHKSF 569
Query: 569 IALITCGNNHTFVLS 613
+ I CG H VL+
Sbjct: 570 VEEIACGAYHVAVLT 584
Score = 45.6 bits (103), Expect = 3e-05
Identities = 34/118 (28%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Frame = +2
Query: 293 DEWGQPFSWGSD-SMGQLGNN---LGAHAQDK-----PKFVKGLATKNVIQVACGAYHSV 445
D G F WG G LG +G+ K PK ++ +V +ACG H+V
Sbjct: 249 DALGDVFIWGEGIGEGVLGGGNRRVGSSFDIKMDSLLPKALESTIVLDVQNIACGGQHAV 308
Query: 446 ALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+T G+ +SWG S G+ G + + + I +L I L+ CG H+ ++ S
Sbjct: 309 LVTKQGESFSWGEESEGRLGHGV-DSNIQQPKLIDALNTTNIELVACGEFHSCAVTLS 365
Score = 40.7 bits (91), Expect = 9e-04
Identities = 21/57 (36%), Positives = 30/57 (52%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTE 200
G + + +P L + +I+ VA GEFHS ++ SG LY+ G D G LG E
Sbjct: 328 GHGVDSNIQQPKLIDALNTTNIELVACGEFHSCAVTLSGDLYTWGKGDFGVLGHGNE 384
Score = 32.7 bits (71), Expect = 0.24
Identities = 19/44 (43%), Positives = 27/44 (61%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
VA G ++ L+ SGH+Y+ G+ GQLG + +D GK P VE
Sbjct: 521 VACGHSLTVALTTSGHVYTMGSPVYGQLG-NSHAD-GKTPNRVE 562
>At1g69710.1 68414.m08022 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1028
Score = 83.4 bits (197), Expect = 1e-16
Identities = 46/129 (35%), Positives = 69/129 (53%), Gaps = 2/129 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG H++ + + G+ FSWG G+LG+ L AQ KPKF+ + +ACG +H
Sbjct: 292 IACGKCHAVLVTKQGEIFSWGEGKGGKLGHGLETDAQ-KPKFISSVRGLGFKSLACGDFH 350
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLIGVPIALITCGNNHTFVLS 613
+ A+T SGDLYSWG ++ L C + + L G+ ++ + CG HT V++
Sbjct: 351 TCAITQSGDLYSWGDGTHNVDLLGHGNESSCWIPKRVTGDLQGLYVSDVACGPWHTAVVA 410
Query: 614 KSRCGFWMG 640
S F G
Sbjct: 411 SSGQLFTFG 419
Score = 62.9 bits (146), Expect = 2e-10
Identities = 39/120 (32%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEW--GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACG 430
+ACG HSL + G ++ GS + GQLGN + P+ V+G + +V ++ACG
Sbjct: 516 VACG--HSLTVSRTSRGHVYTMGSTAYGQLGNPTAKG--NFPERVEGDIVEASVEEIACG 571
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL 610
+YH LT+ ++Y+WG GQ G + ++ + L + ITCG+N T V+
Sbjct: 572 SYHVAVLTSKSEIYTWGKGLNGQLGHGNVENKR-EPAVVGFLREKQVKAITCGSNFTAVI 630
Score = 61.7 bits (143), Expect = 4e-10
Identities = 46/143 (32%), Positives = 68/143 (47%), Gaps = 16/143 (11%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEW-------------GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG 394
T +ACG+ H+ A+ E GQ F+WG GQLG+ + P+ V
Sbjct: 449 TKVACGVWHTAAVVEVTNEASEAEVDSSRGQVFTWGDGEKGQLGHG-DNDTKLLPECVIS 507
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH--ISSLIGVP 568
L +N+ QVACG +V+ T+ G +Y+ G+ +YGQ G T K + ++
Sbjct: 508 LTNENICQVACGHSLTVSRTSRGHVYTMGSTAYGQLG---NPTAKGNFPERVEGDIVEAS 564
Query: 569 IALITCGNNHTFVL-SKSRCGFW 634
+ I CG+ H VL SKS W
Sbjct: 565 VEEIACGSYHVAVLTSKSEIYTW 587
Score = 59.7 bits (138), Expect = 2e-09
Identities = 38/115 (33%), Positives = 60/115 (52%), Gaps = 6/115 (5%)
Frame = +2
Query: 293 DEWGQPFSWG-SDSMGQL---GNNLGAHAQDK--PKFVKGLATKNVIQVACGAYHSVALT 454
D G F WG S S G L GN+L + +D PK ++ + +ACG H+V +T
Sbjct: 244 DALGDVFVWGESISDGVLSGTGNSLNSTTEDALLPKALESTIVLDAQNIACGKCHAVLVT 303
Query: 455 NSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
G+++SWG G+ G L +T + ISS+ G+ + CG+ HT +++S
Sbjct: 304 KQGEIFSWGEGKGGKLGHGL-ETDAQKPKFISSVRGLGFKSLACGDFHTCAITQS 357
Score = 58.0 bits (134), Expect = 5e-09
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 5/135 (3%)
Frame = +2
Query: 212 KESSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK----P 379
++ F ++ L ++ACG H+ AI + G +SWG G +L H + P
Sbjct: 328 QKPKFISSVRGLGFKSLACGDFHTCAITQSGDLYSWGD---GTHNVDLLGHGNESSCWIP 384
Query: 380 KFVKG-LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSL 556
K V G L V VACG +H+ + +SG L+++G ++G G ++ + + SL
Sbjct: 385 KRVTGDLQGLYVSDVACGPWHTAVVASSGQLFTFGDGTFGALGHGDRRSTSVP-REVESL 443
Query: 557 IGVPIALITCGNNHT 601
IG+ + + CG HT
Sbjct: 444 IGLIVTKVACGVWHT 458
Score = 31.1 bits (67), Expect = 0.72
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 84 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN 209
+++I VA G ++ ++ GH+Y+ G+ GQLG T N
Sbjct: 510 NENICQVACGHSLTVSRTSRGHVYTMGSTAYGQLGNPTAKGN 551
Score = 30.7 bits (66), Expect = 0.95
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 96 QAVAAGEFHSLYLSNSGHLYSCGN--NDVGQLGRQTES 203
+++A G+FH+ ++ SG LYS G+ ++V LG ES
Sbjct: 342 KSLACGDFHTCAITQSGDLYSWGDGTHNVDLLGHGNES 379
>At5g42140.1 68418.m05130 zinc finger protein, putative / regulator
of chromosome condensation (RCC1) family protein similar
to zinc finger protein [Arabidopsis thaliana]
gi|15811367|gb|AAL08940
Length = 1073
Score = 82.2 bits (194), Expect = 3e-16
Identities = 44/130 (33%), Positives = 76/130 (58%), Gaps = 3/130 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG++H+ + G+ F+WG S G+LG+ +G P+ ++ LA ++ VACG +H
Sbjct: 277 IACGVKHAALVSRQGEVFTWGEASGGRLGHGMGKDVTG-PQLIESLAATSIDFVACGEFH 335
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISS-LIGVPIALITCGNNHTFVL 610
+ A+T +G++Y+WG ++ GL + T H + IS L G+ IA ++CG HT ++
Sbjct: 336 TCAVTMTGEIYTWGDGTH-NAGLLGHGTDVSHWIPKRISGPLEGLQIASVSCGPWHTALI 394
Query: 611 SKSRCGFWMG 640
+ + F G
Sbjct: 395 TSTGQLFTFG 404
Score = 60.9 bits (141), Expect = 8e-10
Identities = 37/116 (31%), Positives = 62/116 (53%), Gaps = 2/116 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQ-VACGA 433
+ACG ++ + G+ ++ GS GQLGN +A K P V+ TK+ ++ +ACGA
Sbjct: 499 VACGHSLTVGLTTSGKVYTMGSTVYGQLGN---PNADGKLPCLVEDKLTKDCVEEIACGA 555
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
YH LT+ ++++WG + G+ G + RK + +L + I CG+N T
Sbjct: 556 YHVAVLTSRNEVFTWGKGANGRLGHGDVEDRKAPTL-VDALKERHVKNIACGSNFT 610
Score = 50.4 bits (115), Expect = 1e-06
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 11/98 (11%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEW-----------GQPFSWGSDSMGQLGNNLGAHAQDKPKFVK 391
L +ACG+ H+ AI E G+ F+WG +LG+ + KP V
Sbjct: 431 LRTIAVACGVWHAAAIVEVIVTHSSSSVSSGKLFTWGDGDKSRLGHG-DKEPRLKPTCVS 489
Query: 392 GLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
L +VACG +V LT SG +Y+ G+ YGQ G
Sbjct: 490 ALIDHTFHRVACGHSLTVGLTTSGKVYTMGSTVYGQLG 527
Score = 41.9 bits (94), Expect = 4e-04
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +2
Query: 377 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSL 556
PK ++ +V +ACG H+ ++ G++++WG S G+ G + + Q I SL
Sbjct: 263 PKPLESNVVLDVHHIACGVKHAALVSRQGEVFTWGEASGGRLGHGMGKD-VTGPQLIESL 321
Query: 557 IGVPIALITCGNNHT 601
I + CG HT
Sbjct: 322 AATSIDFVACGEFHT 336
>At5g16040.1 68418.m01875 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 396
Score = 82.2 bits (194), Expect = 3e-16
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IA G H+LA+ E G ++WG++ GQLG + P V+GL ++ +A G +H
Sbjct: 201 IAVGAFHNLALKEDGTLWAWGNNEYGQLGTG-DTQPRSYPIPVQGLDDLTLVDIAAGGWH 259
Query: 440 SVALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSK 616
S ALTN G++Y WG +G+ G + ++ K Q ++ L G I ++CG H+ L++
Sbjct: 260 STALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGTHSVALTR 319
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
++ G ++SLAI + G+ F+WG + G LG+ + P VK LA ++Q A G +
Sbjct: 42 SVVGGSRNSLAICDDGKLFTWGWNQRGTLGHPPETKTESTPSLVKSLANVKIVQAAIGGW 101
Query: 437 HSVALTNSGDLYSWGANSYGQCGLE 511
H +A+ + G Y+WG N YGQCG E
Sbjct: 102 HCLAVDDQGRAYAWGGNEYGQCGEE 126
Score = 62.9 bits (146), Expect = 2e-10
Identities = 32/83 (38%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
IA G HS A+ G+ + WG G+LG + ++ P+ V LA +++IQV+CG
Sbjct: 253 IAAGGWHSTALTNEGEVYGWGRGEHGRLGFGDNDKSSKMLPQKVNLLAGEDIIQVSCGGT 312
Query: 437 HSVALTNSGDLYSWGANSYGQCG 505
HSVALT G ++S+G +G+ G
Sbjct: 313 HSVALTRDGRIFSFGRGDHGRLG 335
Score = 49.6 bits (113), Expect = 2e-06
Identities = 35/118 (29%), Positives = 55/118 (46%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+A G HS+ + G ++WG + P V+GL +NV +A GA+H
Sbjct: 155 VAAGGTHSVVLTREGYVWTWGQPWPPGDIKQISV-----PVRVQGL--ENVRLIAVGAFH 207
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
++AL G L++WG N YGQ G Q R + + L + + I G H+ L+
Sbjct: 208 NLALKEDGTLWAWGNNEYGQLGTGDTQPRSYPIP-VQGLDDLTLVDIAAGGWHSTALT 264
Score = 48.4 bits (110), Expect = 4e-06
Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +2
Query: 263 ACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKP-----KFVKGLATK-NVIQVA 424
A G H LA+D+ G+ ++WG + GQ G +P K A + V QVA
Sbjct: 97 AIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRPVRRDIVIPKRCAQQLTVRQVA 156
Query: 425 CGAYHSVALTNSGDLYSWG 481
G HSV LT G +++WG
Sbjct: 157 AGGTHSVVLTREGYVWTWG 175
Score = 39.9 bits (89), Expect = 0.002
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 87 DHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTI 254
++++ +A G FH+L L G L++ GNN+ GQLG ++ P V+ D T+
Sbjct: 196 ENVRLIAVGAFHNLALKEDGTLWAWGNNEYGQLG-TGDTQPRSYPIPVQGLDDLTL 250
Score = 34.7 bits (76), Expect = 0.058
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNP 221
P+L K + I A G +H L + + G Y+ G N+ GQ G + D P
Sbjct: 82 PSLVKSLANVKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPSKDETGRP 135
Score = 32.3 bits (70), Expect = 0.31
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+AAG +HS L+N G +Y G + G+LG
Sbjct: 253 IAAGGWHSTALTNEGEVYGWGRGEHGRLG 281
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +3
Query: 615 NPGAVFGWGKNTHGTTG 665
N G V+GWG+ HG G
Sbjct: 265 NEGEVYGWGRGEHGRLG 281
>At5g08710.1 68418.m01035 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GI:10177674) {Arabidopsis thaliana}
Length = 434
Score = 80.6 bits (190), Expect = 9e-16
Identities = 44/122 (36%), Positives = 70/122 (57%), Gaps = 2/122 (1%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACG 430
T +ACG H+L + E + F+ G + GQLG +++ +HA D P V GL K+++ ++ G
Sbjct: 85 TAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMD-PLEVSGL-DKDILHISAG 142
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL-QHISSLIGVPIALITCGNNHTFV 607
YHS A+T G+LY WG NS GQ GL R + + +L G+ I + G+ H+
Sbjct: 143 YYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSEHSVA 202
Query: 608 LS 613
++
Sbjct: 203 VT 204
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/127 (28%), Positives = 59/127 (46%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T +A GL HS DE G F +G S+ ++G G P + + +VACG
Sbjct: 252 TNVAAGLLHSACTDENGSAFMFGEKSINKMGFG-GVRNATTPSIISEVPYAE--EVACGG 308
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
YH+ +T G+LY+WG+N G G + ++ + ++ ++CG HT +S
Sbjct: 309 YHTCVVTRGGELYTWGSNENGCLGTDSTYVSHSPVRVEGPFLESTVSQVSCGWKHTAAIS 368
Query: 614 KSRCGFW 634
+ W
Sbjct: 369 DNNVFTW 375
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/83 (38%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
I+ G HS AI G+ + WG +S GQLG A P V+ L + VA G+
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQSVALGSE 198
Query: 437 HSVALTNSGDLYSWGANSYGQCG 505
HSVA+T+ G++ SWG G+ G
Sbjct: 199 HSVAVTDGGEVLSWGGGGSGRLG 221
Score = 54.0 bits (124), Expect = 9e-08
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 12/136 (8%)
Frame = +2
Query: 245 LHNTTI---ACGLQHSLAIDEWGQPFSWGSDSMGQLGNN--------LGAHAQDKPKFVK 391
LH TI A G +HS+A+ + G+ SWG G+LG+ L ++++ P+ +K
Sbjct: 185 LHGITIQSVALGSEHSVAVTDGGEVLSWGGGGSGRLGHGHQSSLFGILRSNSEFTPRLIK 244
Query: 392 GLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPI 571
L V VA G HS +G + +G S + G R I S VP
Sbjct: 245 ELEGIKVTNVAAGLLHSACTDENGSAFMFGEKSINKMGFG--GVRNATTPSIIS--EVPY 300
Query: 572 A-LITCGNNHTFVLSK 616
A + CG HT V+++
Sbjct: 301 AEEVACGGYHTCVVTR 316
Score = 38.3 bits (85), Expect = 0.005
Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = +3
Query: 84 SDH-IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNP 221
SDH I AVA G H+L+L+ + +++ G ND GQLG + +P
Sbjct: 80 SDHSITAVACGGAHTLFLTETRRVFATGLNDCGQLGVSDVKSHAMDP 126
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE-TFKDCTIR 257
E + + VA G +H+ ++ G LY+ G+N+ G LG + + +P VE F + T+
Sbjct: 297 EVPYAEEVACGGYHTCVVTRGGELYTWGSNENGCLGTDS-TYVSHSPVRVEGPFLESTVS 355
Query: 258 Q 260
Q
Sbjct: 356 Q 356
Score = 32.3 bits (70), Expect = 0.31
Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN-GKNPALVETFKDCTIR 257
++AG +HS ++ G LY G N GQLG ++ + P VE TI+
Sbjct: 139 ISAGYYHSAAITVDGELYMWGKNSSGQLGLGKKAARVVRVPTKVEALHGITIQ 191
Score = 29.9 bits (64), Expect = 1.7
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 413 IQVACGAYHSVALTNSGDLYS--WGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITC 586
I V C + S + SG ++ WG+ YG+ GL ++ S+L I + C
Sbjct: 34 IGVCCSRWVS---SESGKRFAAMWGSGDYGRLGLGNLDSQWTPAV-CSALSDHSITAVAC 89
Query: 587 GNNHTFVLSKSRCGFWMG 640
G HT L+++R F G
Sbjct: 90 GGAHTLFLTETRRVFATG 107
>At3g02510.1 68416.m00239 regulator of chromosome condensation
(RCC1) family protein similar to UVB-resistance protein
UVR8 [Arabidopsis thaliana] GI:5478530; contains Pfam
profile PF00415: Regulator of chromosome condensation
(RCC1)
Length = 393
Score = 80.2 bits (189), Expect = 1e-15
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 1/120 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IA G H+LA++E G+ +WG++ GQLG P V+GL ++ +A G +H
Sbjct: 201 IAVGAFHNLALEEDGRLLAWGNNEYGQLGTG-DTQPTSHPVPVQGLDDLTLVDIAAGGWH 259
Query: 440 SVALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSK 616
S ALT+ G++Y WG +G+ GL + ++ K Q ++ L I ++CG H+ L++
Sbjct: 260 STALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGTHSVALTR 319
Score = 73.7 bits (173), Expect = 1e-13
Identities = 33/85 (38%), Positives = 49/85 (57%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
++ G ++SLAI + G F+WG + G LG+ ++ P VK LA + Q A G +
Sbjct: 42 SVVSGSRNSLAICDDGTMFTWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGW 101
Query: 437 HSVALTNSGDLYSWGANSYGQCGLE 511
H +A+ + G Y+WG N YGQCG E
Sbjct: 102 HCLAVDDQGRAYAWGGNEYGQCGEE 126
Score = 64.1 bits (149), Expect = 8e-11
Identities = 32/83 (38%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
IA G HS A+ + G+ + WG G+LG + ++ P+ V LA +++IQV+CG
Sbjct: 253 IAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLLAEEDIIQVSCGGT 312
Query: 437 HSVALTNSGDLYSWGANSYGQCG 505
HSVALT G ++S+G +G+ G
Sbjct: 313 HSVALTRDGRIFSFGRGDHGRLG 335
Score = 52.0 bits (119), Expect = 4e-07
Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLG-----NNLGAHAQDKPKFVKGLATK-NVI 415
T A G H LA+D+ G+ ++WG + GQ G + +G + K A K V
Sbjct: 94 TQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPLKDEMGRPVRRDIVIPKRCAPKLTVR 153
Query: 416 QVACGAYHSVALTNSGDLYSWG 481
QVA G HSV LT G +++WG
Sbjct: 154 QVAAGGTHSVVLTREGHVWTWG 175
Score = 47.6 bits (108), Expect = 8e-06
Identities = 35/118 (29%), Positives = 53/118 (44%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+A G HS+ + G ++WG + P V+GL +NV +A GA+H
Sbjct: 155 VAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISV-----PVRVQGL--ENVRLIAVGAFH 207
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
++AL G L +WG N YGQ G Q H + L + + I G H+ L+
Sbjct: 208 NLALEEDGRLLAWGNNEYGQLGTGDTQPTS-HPVPVQGLDDLTLVDIAAGGWHSTALT 264
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Frame = +3
Query: 87 DHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTI 254
++++ +A G FH+L L G L + GNN+ GQLG ++ +P V+ D T+
Sbjct: 196 ENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLG-TGDTQPTSHPVPVQGLDDLTL 250
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 230
+AAG +HS L++ G +Y G + G+LG DN K+ +V
Sbjct: 253 IAAGGWHSTALTDKGEVYGWGRGEHGRLGL---GDNDKSSKMV 292
>At1g76950.1 68414.m08958 zinc finger protein (PRAF1) / regulator of
chromosome condensation (RCC1) family protein identical
to zinc finger protein PRAF1 [Arabidopsis thaliana]
gi|15811367|gb|AAL08940.
Length = 1103
Score = 77.8 bits (183), Expect = 6e-15
Identities = 43/122 (35%), Positives = 74/122 (60%), Gaps = 4/122 (3%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL-ATKNVIQVACGAY 436
IACG++H+ + G+ F+WG +S G+LG+ +G P+ V+ L AT +V VACG +
Sbjct: 286 IACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKDV-FHPRLVESLTATSSVDFVACGEF 344
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCH---LQHISSLIGVPIALITCGNNHTFV 607
H+ A+T +G+LY+WG ++ GL + + H + SL G+ +A ++CG HT +
Sbjct: 345 HTCAVTLAGELYTWGDGTH-NVGLLGHGSDISHWIPKRIAGSLEGLHVASVSCGPWHTAL 403
Query: 608 LS 613
++
Sbjct: 404 IT 405
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/114 (34%), Positives = 61/114 (53%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG ++ + GQ F+ GS GQLGN L + LA++ V +++CGAYH
Sbjct: 510 IACGHSLTVGLTTSGQVFTMGSTVYGQLGN-LQTDGKLPCLVEDKLASEFVEEISCGAYH 568
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
ALT+ ++Y+WG + G+ G + RK + +L + I CG+N+T
Sbjct: 569 VAALTSRNEVYTWGKGANGRLGHGDLEDRKVP-TIVEALKDRHVKYIACGSNYT 621
Score = 49.2 bits (112), Expect = 3e-06
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 12/135 (8%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEW------------GQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
L ++CG+ H+ A+ E G+ F+WG +LG+ + KP V
Sbjct: 441 LRTIAVSCGVWHTAAVVEIIVTQSNSSSVSSGKLFTWGDGDKNRLGHG-DKDPRLKPTCV 499
Query: 389 KGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVP 568
L N ++ACG +V LT SG +++ G+ YGQ G L K L
Sbjct: 500 PALIDYNFHKIACGHSLTVGLTTSGQVFTMGSTVYGQLG-NLQTDGKLPCLVEDKLASEF 558
Query: 569 IALITCGNNHTFVLS 613
+ I+CG H L+
Sbjct: 559 VEEISCGAYHVAALT 573
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +2
Query: 377 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSL 556
PK ++ +V Q+ACG H+ +T G++++WG S G+ G + + H + + SL
Sbjct: 272 PKPLESNIVLDVHQIACGVRHAAFVTRQGEIFTWGEESGGRLGHGIGKD-VFHPRLVESL 330
Query: 557 IGV-PIALITCGNNHT 601
+ + CG HT
Sbjct: 331 TATSSVDFVACGEFHT 346
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGN--NDVGQLGRQTE 200
+ VA GEFH+ ++ +G LY+ G+ ++VG LG ++
Sbjct: 336 VDFVACGEFHTCAVTLAGELYTWGDGTHNVGLLGHGSD 373
>At3g02300.1 68416.m00212 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 471
Score = 76.6 bits (180), Expect = 1e-14
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 10/128 (7%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLAT--------KNVI 415
++CG H +A+ E G +WG + GQLG + P+ + A ++
Sbjct: 171 VSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVTCEGLQAPRVINAYAKFLDEAPELVKIM 230
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLIGVPIALITCG 589
Q++CG YH+ AL+++G++Y+WG S GQ G Q+ L + + L GV + + CG
Sbjct: 231 QLSCGEYHTAALSDAGEVYTWGLGSMGQLGHVSLQSGDKELIPRRVVGLDGVSMKEVACG 290
Query: 590 NNHTFVLS 613
HT LS
Sbjct: 291 GVHTCALS 298
Score = 75.8 bits (178), Expect = 3e-14
Identities = 46/138 (33%), Positives = 75/138 (54%), Gaps = 14/138 (10%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK---PKFVKGLATKNVIQVACG 430
++CG H+ A+ + G+ ++WG SMGQLG+ + + DK P+ V GL ++ +VACG
Sbjct: 232 LSCGEYHTAALSDAGEVYTWGLGSMGQLGH-VSLQSGDKELIPRRVVGLDGVSMKEVACG 290
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGL--------ELYQTRKCHLQHISSL-IGVPIALIT 583
H+ AL+ G LY+WG GQ GL + + L+++ L I + L+
Sbjct: 291 GVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDVRLVA 350
Query: 584 CGNNHTFVLSKSR--CGF 631
CG++HT V + CG+
Sbjct: 351 CGHSHTLVYMREGRICGW 368
Score = 52.0 bits (119), Expect = 4e-07
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)
Frame = +2
Query: 281 SLAIDEWGQPFSWGSDSMGQLGNN-----LGAHAQDKPKFVKGLATKNV--IQVACGAYH 439
S++I + WG + GQ G N L Q P+ A N + ++CG H
Sbjct: 13 SVSIPTKSAIYVWGYNQSGQTGRNEQEKLLRIPKQLPPELFGCPAGANSRWLDISCGREH 72
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+ A+ + G L++WGAN YGQ G RK H + + L + ++CG T +++
Sbjct: 73 TAAVASDGSLFAWGANEYGQLGDGTEVGRK-HPKKVKQLQSEFVKFVSCGAFCTAAIAEP 131
Query: 620 R 622
R
Sbjct: 132 R 132
Score = 49.2 bits (112), Expect = 3e-06
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+CG +H+ A+ G F+WG++ GQLG+ + PK VK L ++ V V+CGA+
Sbjct: 66 ISCGREHTAAVASDGSLFAWGANEYGQLGDGTEV-GRKHPKKVKQLQSEFVKFVSCGAFC 124
Query: 440 SVALT----NSGD-----LYSWGAN 487
+ A+ N G L+ WG N
Sbjct: 125 TAAIAEPRENDGTLSTSRLWVWGQN 149
Score = 43.6 bits (98), Expect = 1e-04
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 9/93 (9%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNN-----LGAHAQDKPKFVKGLAT----KNV 412
+ACG H+ A+ G ++WG GQLG + + ++ + +V
Sbjct: 287 VACGGVHTCALSLEGALYAWGGGQAGQLGLGPQSGFFFSVSNGSEMLLRNVPVLVIPTDV 346
Query: 413 IQVACGAYHSVALTNSGDLYSWGANSYGQCGLE 511
VACG H++ G + WG NSYGQ E
Sbjct: 347 RLVACGHSHTLVYMREGRICGWGYNSYGQAANE 379
Score = 42.3 bits (95), Expect = 3e-04
Identities = 33/100 (33%), Positives = 47/100 (47%), Gaps = 10/100 (10%)
Frame = +2
Query: 344 GNNLGAHAQDKPKFVKGL--ATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQ------ 499
G N G++ P+ G AT + QV+CG H VAL+ G L +WG N GQ
Sbjct: 147 GQNQGSNL---PRLFSGAFPATTAIRQVSCGTAHVVALSEEGLLQAWGYNEQGQLGRGVT 203
Query: 500 C-GLELYQTRKCHLQHISSLIG-VPIALITCGNNHTFVLS 613
C GL+ + + + + V I ++CG HT LS
Sbjct: 204 CEGLQAPRVINAYAKFLDEAPELVKIMQLSCGEYHTAALS 243
Score = 35.1 bits (77), Expect = 0.044
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ACG H+L G+ WG +S GQ N ++A P V V ++A G H
Sbjct: 349 VACGHSHTLVYMREGRICGWGYNSYGQAANEKSSYAW-YPSPV-DWCVGQVRKLAAGGGH 406
Query: 440 SVALTNSGDL 469
S LT++ L
Sbjct: 407 SAVLTDAFSL 416
Score = 33.5 bits (73), Expect = 0.14
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
I ++ GE+H+ LS++G +Y+ G +GQLG
Sbjct: 229 IMQLSCGEYHTAALSDAGEVYTWGLGSMGQLG 260
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTES 203
++ VA G H+ LS G LY+ G GQLG +S
Sbjct: 284 MKEVACGGVHTCALSLEGALYAWGGGQAGQLGLGPQS 320
>At5g63860.1 68418.m08016 UVB-resistance protein (UVR8) identical to
UVB-resistance protein UVR8 (GI:5478530, GB:AAD43920.1)
[Arabidopsis thaliana]; contains Pfam 00415: Regulator
of chromosome condensation (RCC1)
Length = 440
Score = 75.4 bits (177), Expect = 3e-14
Identities = 45/122 (36%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATKNVIQVACGA 433
IACG H LA+ G+ SWG + GQLG LG +D P+ ++ + VA GA
Sbjct: 125 IACGDSHCLAVTMEGEVQSWGRNQNGQLG--LG-DTEDSLVPQKIQAFEGIRIKMVAAGA 181
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
H+ A+T GDLY WG YG GL +T + + ++S G ++++ CG HT +S
Sbjct: 182 EHTAAVTEDGDLYGWGWGRYGNLGLG-DRTDRLVPERVTSTGGEKMSMVACGWRHTISVS 240
Query: 614 KS 619
S
Sbjct: 241 YS 242
Score = 66.9 bits (156), Expect = 1e-11
Identities = 37/121 (30%), Positives = 62/121 (51%), Gaps = 1/121 (0%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWG-QPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
++ CG H++A + G + +SWG G+LG+ + P +K L + Q+ACG
Sbjct: 71 SVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFT-PLPIKALHGIRIKQIACGD 129
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
H +A+T G++ SWG N GQ GL + Q I + G+ I ++ G HT ++
Sbjct: 130 SHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVP-QKIQAFEGIRIKMVAAGAEHTAAVT 188
Query: 614 K 616
+
Sbjct: 189 E 189
Score = 63.7 bits (148), Expect = 1e-10
Identities = 39/119 (32%), Positives = 59/119 (49%), Gaps = 1/119 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+ G HS+A+ SWG GQLG+ A + P + L ++ V CGA H
Sbjct: 20 ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 78
Query: 440 SVALTNSG-DLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
+VA + SG ++YSWG +G+ G L I +L G+ I I CG++H ++
Sbjct: 79 TVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPLP-IKALHGIRIKQIACGDSHCLAVT 136
Score = 63.7 bits (148), Expect = 1e-10
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 1/128 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGN-NLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+ACG +H++++ G +++G GQLG+ +L H P ++ L+ + Q++ G
Sbjct: 229 VACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLI--PHKLEALSNSFISQISGGWR 286
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSK 616
H++ALT+ G LY WG N +GQ G+ +C + + ++CG HT +++
Sbjct: 287 HTMALTSDGKLYGWGWNKFGQVGVG-NNLDQCSPVQVRFPDDQKVVQVSCGWRHTLAVTE 345
Query: 617 SRCGFWMG 640
F G
Sbjct: 346 RNNVFAWG 353
Score = 57.6 bits (133), Expect = 7e-09
Identities = 29/85 (34%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG--NNLGAHAQDKPKFVKGLATKNVIQVACGA 433
I+ G +H++A+ G+ + WG + GQ+G NNL Q P V+ + V+QV+CG
Sbjct: 281 ISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLD---QCSPVQVRFPDDQKVVQVSCGW 337
Query: 434 YHSVALTNSGDLYSWGANSYGQCGL 508
H++A+T ++++WG + GQ G+
Sbjct: 338 RHTLAVTERNNVFAWGRGTNGQLGI 362
Score = 56.0 bits (129), Expect = 2e-08
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKGLATKNVIQVACGAY 436
+A G +H+ A+ E G + WG G LG LG P+ V + + VACG
Sbjct: 177 VAAGAEHTAAVTEDGDLYGWGWGRYGNLG--LGDRTDRLVPERVTSTGGEKMSMVACGWR 234
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLIGVPIALITCGNNHTFVL 610
H+++++ SG LY++G + YGQ G + + HL + +L I+ I+ G HT L
Sbjct: 235 HTISVSYSGALYTYGWSKYGQLG---HGDLEDHLIPHKLEALSNSFISQISGGWRHTMAL 291
Query: 611 S 613
+
Sbjct: 292 T 292
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/72 (37%), Positives = 39/72 (54%)
Frame = +2
Query: 404 KNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALIT 583
+ V+ ++ GA HSVAL + + SWG GQ G + R Q +S+L G I +T
Sbjct: 15 RKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQ-LSALDGHQIVSVT 73
Query: 584 CGNNHTFVLSKS 619
CG +HT S+S
Sbjct: 74 CGADHTVAYSQS 85
Score = 31.9 bits (69), Expect = 0.41
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIR 257
I+ +A G+ H L ++ G + S G N GQLG ++++ P ++ F+ I+
Sbjct: 122 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-LGDTEDSLVPQKIQAFEGIRIK 175
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +3
Query: 87 DHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN 209
+ + VA G H++ +S SG LY+ G + GQLG D+
Sbjct: 224 EKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLEDH 264
>At3g53830.1 68416.m05947 regulator of chromosome condensation
(RCC1) family protein / UVB-resistance protein-related
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to UVB-resistance protein
UVR8 (GIi;10177674) [Arabidopsis thaliana]
Length = 487
Score = 74.5 bits (175), Expect = 6e-14
Identities = 44/123 (35%), Positives = 61/123 (49%), Gaps = 2/123 (1%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG--LATKNVIQVACG 430
++A GL H++ I G+ +++G + GQLG HA+ P+ + G L K+ V+CG
Sbjct: 366 SVAAGLWHTICISSDGKVYAFGGNQFGQLGTGTD-HAEILPRLLDGQNLEGKHAKAVSCG 424
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL 610
A HS L G L WG N YGQ GL R Q L G + + CG HT +L
Sbjct: 425 ARHSAVLAEDGQLLCWGWNKYGQLGLGDTNDRNIPTQ--VQLDGCRLRKVACGWWHTLLL 482
Query: 611 SKS 619
S
Sbjct: 483 GDS 485
Score = 58.0 bits (134), Expect = 5e-09
Identities = 34/120 (28%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+CG +HS AI + G ++G GQ G+ + Q +P V + + + VA G +H
Sbjct: 315 ISCGGRHSAAITDAGGLITFGWGLYGQCGHG-NTNDQLRPMAVSEVKSVRMESVAAGLWH 373
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKC-HLQHISSLIGVPIALITCGNNHTFVLSK 616
++ +++ G +Y++G N +GQ G L +L G ++CG H+ VL++
Sbjct: 374 TICISSDGKVYAFGGNQFGQLGTGTDHAEILPRLLDGQNLEGKHAKAVSCGARHSAVLAE 433
Score = 41.5 bits (93), Expect = 5e-04
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Frame = +2
Query: 248 HNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLG-AHAQDKPKFVKGLATKNVIQVA 424
H ++CG +HS + E GQ WG + GQLG LG + ++ P V+ L + +VA
Sbjct: 417 HAKAVSCGARHSAVLAEDGQLLCWGWNKYGQLG--LGDTNDRNIPTQVQ-LDGCRLRKVA 473
Query: 425 CGAYHSVALTNS 460
CG +H++ L +S
Sbjct: 474 CGWWHTLLLGDS 485
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 54 IKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTE 200
++P +S +++VAAG +H++ +S+ G +Y+ G N GQLG T+
Sbjct: 351 LRPMAVSEVKSVRMESVAAGLWHTICISSDGKVYAFGGNQFGQLGTGTD 399
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 269 GLQHSLAIDEWGQPFSWGS-DSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAYHS 442
G ++AI E G+ +WGS D GQ G H + F L T+ V+Q + G H
Sbjct: 60 GCGFAMAISEKGKLITWGSTDDEGQSYVASGKHGETPEPFP--LPTEAPVVQASSGWAHC 117
Query: 443 VALTNSGDLYSWG 481
+T +G+ ++WG
Sbjct: 118 AVVTETGEAFTWG 130
>At3g47660.1 68416.m05188 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1)
Length = 951
Score = 73.7 bits (173), Expect = 1e-13
Identities = 39/125 (31%), Positives = 69/125 (55%), Gaps = 3/125 (2%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+I+CG +++ + + GQ +SWG +S G+LG+ + ++ PK + V CG +
Sbjct: 300 SISCGTNYAVLVTKQGQMYSWGEESGGRLGHGVCSYVPH-PKLIDEFNGSTVELADCGEF 358
Query: 437 HSVALTNSGDLYSWGANSY--GQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT-FV 607
H+ A+T SGDLY+WG + G GL + ++ + + G+ + I+CG HT FV
Sbjct: 359 HTCAVTASGDLYAWGDGDHNAGLLGLGSGASHWKPVRILGQMEGIYVKAISCGPWHTAFV 418
Query: 608 LSKSR 622
S+ +
Sbjct: 419 TSEGK 423
Score = 58.0 bits (134), Expect = 5e-09
Identities = 42/153 (27%), Positives = 71/153 (46%), Gaps = 9/153 (5%)
Frame = +2
Query: 209 WKESSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
WK G + ++ I+CG H+ + G+ F++G + G LG+ + + P+ V
Sbjct: 391 WKPVRILGQMEGIYVKAISCGPWHTAFVTSEGKLFTFGDGTFGALGHG-DRISTNIPREV 449
Query: 389 KGLATKNVIQVACGAYHSVAL-------TNSGDLYSWGANSYGQCGLELYQTRKCHL--Q 541
+ L I+ ACG +HS A+ T+SG L++WG G+ G + +C L
Sbjct: 450 EALNGCRTIKAACGVWHSAAVVSVFGEATSSGKLFTWGDGDDGRLG---HGDIECRLIPS 506
Query: 542 HISSLIGVPIALITCGNNHTFVLSKSRCGFWMG 640
++ L + CG + T LS S + MG
Sbjct: 507 CVTELDTTSFQQVACGQSITVALSMSGQVYAMG 539
Score = 51.2 bits (117), Expect = 6e-07
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 1/115 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQ-VACGAY 436
+ACG ++A+ GQ ++ G+ P ++G K+ +Q VACG +
Sbjct: 519 VACGQSITVALSMSGQVYAMGTADPSH-------DIVRAPSCIEGGLGKSFVQEVACGFH 571
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
H L + ++Y+WG S GQ G + R C + +L G + + CG+N+T
Sbjct: 572 HIAVLNSKAEVYTWGKGSNGQLGHGDTEYR-CMPTLVKALKGKQVRKVVCGSNYT 625
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/81 (29%), Positives = 39/81 (48%)
Frame = +2
Query: 377 PKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSL 556
PK +K + ++CG ++V +T G +YSWG S G+ G + + H + I
Sbjct: 287 PKVLKSHVALDAQSISCGTNYAVLVTKQGQMYSWGEESGGRLGHGVC-SYVPHPKLIDEF 345
Query: 557 IGVPIALITCGNNHTFVLSKS 619
G + L CG HT ++ S
Sbjct: 346 NGSTVELADCGEFHTCAVTAS 366
Score = 45.6 bits (103), Expect = 3e-05
Identities = 26/106 (24%), Positives = 43/106 (40%)
Frame = +2
Query: 218 SSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL 397
S G + + +ACG H ++ + ++WG S GQLG+ + P VK L
Sbjct: 552 SCIEGGLGKSFVQEVACGFHHIAVLNSKAEVYTWGKGSNGQLGHG-DTEYRCMPTLVKAL 610
Query: 398 ATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCH 535
K V +V CG+ ++ + + + C RK H
Sbjct: 611 KGKQVRKVVCGSNYTATICLHKPITGTDSTKCSGCRHPFNYMRKLH 656
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNND--VGQLG 188
G + V P L ++ GEFH+ ++ SG LY+ G+ D G LG
Sbjct: 329 GHGVCSYVPHPKLIDEFNGSTVELADCGEFHTCAVTASGDLYAWGDGDHNAGLLG 383
>At3g23270.1 68416.m02933 regulator of chromosome condensation
(RCC1) family protein contains Pfam domain PF00415:
Regulator of chromosome condensation (RCC1); similar to
zinc finger protein (GI:15811367) [Arabidopsis
thaliana]; similar to chromosome condensation regulator
protein (GI:22770461) [Cicer arietinum]
Length = 1045
Score = 72.1 bits (169), Expect = 3e-13
Identities = 39/117 (33%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I CG++H + G+ F+WG + G+LG+ + +PK V+ LA N+ VACG YH
Sbjct: 256 IVCGVRHVALVTRQGEVFTWGEEVGGRLGHGIQVDIS-RPKLVEFLALTNIDFVACGEYH 314
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISS-LIGVPIALITCGNNHT 601
+ ++ SGDL+SWG + GL + + H + +S L G+ + + CG H+
Sbjct: 315 TCVVSTSGDLFSWG-DGIHNVGLLGHGSDISHWIPKRVSGPLEGLQVLSVACGTWHS 370
Score = 57.2 bits (132), Expect = 1e-08
Identities = 46/157 (29%), Positives = 67/157 (42%), Gaps = 13/157 (8%)
Frame = +2
Query: 209 WKESSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
W SG + L ++ACG HS G+ F++G + G LG+ + PK V
Sbjct: 346 WIPKRVSGPLEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHG-NRESVSYPKEV 404
Query: 389 KGLATKNVIQVACGAYHSVALT----------NSGDLYSWG---ANSYGQCGLELYQTRK 529
+ L ++VAC +H+ A+ +S L++WG N G E Y
Sbjct: 405 QSLNGLKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHGNKETYLLPT 464
Query: 530 CHLQHISSLIGVPIALITCGNNHTFVLSKSRCGFWMG 640
C +SSLI I CG+ T L+ S F MG
Sbjct: 465 C----VSSLIDYNFHKIACGHTFTVALTTSGHVFTMG 497
Score = 56.8 bits (131), Expect = 1e-08
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 12/142 (8%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDE-WGQP---------FSWGSDSMGQLGNNLGAHAQDKPKFVKG 394
L +AC + H+ AI E GQ F+WG +LG+ P V
Sbjct: 410 LKTVKVACSIWHTAAIVEVMGQTATSMSSRKLFTWGDGDKNRLGHG-NKETYLLPTCVSS 468
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTR-KCHLQHISSLIGVPI 571
L N ++ACG +VALT SG +++ G ++GQ G + + C +Q L+G +
Sbjct: 469 LIDYNFHKIACGHTFTVALTTSGHVFTMGGTAHGQLGNSISDGKLPCLVQ--DRLVGEFV 526
Query: 572 ALITCGNNHTFVL-SKSRCGFW 634
I CG +H VL S+S W
Sbjct: 527 EEIACGAHHVAVLTSRSEVFTW 548
Score = 55.6 bits (128), Expect = 3e-08
Identities = 36/117 (30%), Positives = 57/117 (48%), Gaps = 3/117 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSD--SMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACG 430
+ACG H+ + G FSWG ++G LG+ + PK V G L V+ VACG
Sbjct: 308 VACGEYHTCVVSTSGDLFSWGDGIHNVGLLGHGSDI-SHWIPKRVSGPLEGLQVLSVACG 366
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
+HS T +G L+++G ++G G + + + + SL G+ + C HT
Sbjct: 367 TWHSALATANGKLFTFGDGAFGVLG-HGNRESVSYPKEVQSLNGLKTVKVACSIWHT 422
Score = 55.2 bits (127), Expect = 4e-08
Identities = 33/115 (28%), Positives = 61/115 (53%), Gaps = 1/115 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG-LATKNVIQVACGAY 436
IACG ++A+ G F+ G + GQLGN++ P V+ L + V ++ACGA+
Sbjct: 477 IACGHTFTVALTTSGHVFTMGGTAHGQLGNSISDGKL--PCLVQDRLVGEFVEEIACGAH 534
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
H LT+ ++++WG + G+ G + ++ + +L + ++CG+N T
Sbjct: 535 HVAVLTSRSEVFTWGKGANGRLGHGDTEDKRTPTL-VEALRDRHVKSLSCGSNFT 588
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/107 (25%), Positives = 46/107 (42%)
Frame = +2
Query: 299 WGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 478
WG+ ++ G G N P+ ++ +V Q+ CG H +T G++++W
Sbjct: 216 WGEVWTEGILPDGTASNETVKTDVLTPRPLESNVVLDVHQIVCGVRHVALVTRQGEVFTW 275
Query: 479 GANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
G G+ G + Q + + L I + CG HT V+S S
Sbjct: 276 GEEVGGRLGHGI-QVDISRPKLVEFLALTNIDFVACGEYHTCVVSTS 321
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
+A G ++ L+ SGH+++ G GQLG +GK P LV+
Sbjct: 477 IACGHTFTVALTTSGHVFTMGGTAHGQLGNSI--SDGKLPCLVQ 518
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 71.3 bits (167), Expect = 6e-13
Identities = 38/117 (32%), Positives = 66/117 (56%), Gaps = 3/117 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG++H + G+ F+W ++ G+LG+ + +PK V+ LA N+ VACG YH
Sbjct: 1207 IACGVRHIALVTRQGEVFTWEEEAGGRLGHGIQVDVC-RPKLVEFLALTNIDFVACGEYH 1265
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHL--QHISSLI-GVPIALITCGNNHT 601
+ A++ SGDL++WG + GL + + H + +S + G+ + + CG H+
Sbjct: 1266 TCAVSTSGDLFTWG-DGIHNVGLLGHGSDLSHWIPKRVSGPVEGLQVLSVACGTWHS 1321
Score = 64.9 bits (151), Expect = 5e-11
Identities = 50/157 (31%), Positives = 71/157 (45%), Gaps = 13/157 (8%)
Frame = +2
Query: 209 WKESSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFV 388
W SG + L ++ACG HS G+ F++G + G LG+ + PK V
Sbjct: 1297 WIPKRVSGPVEGLQVLSVACGTWHSALATANGKLFTFGDGAFGVLGHG-DRESVSYPKEV 1355
Query: 389 KGLATKNVIQVACGAYHSVAL----------TNSGDLYSWG---ANSYGQCGLELYQTRK 529
K L+ ++VACG +H+VA+ T+S L++WG N G E Y
Sbjct: 1356 KMLSGLKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHGNKETYLLPT 1415
Query: 530 CHLQHISSLIGVPIALITCGNNHTFVLSKSRCGFWMG 640
C +SSLI I CG+ T L+ S F MG
Sbjct: 1416 C----VSSLIDYNFNQIACGHTFTVALTTSGHVFTMG 1448
Score = 59.7 bits (138), Expect = 2e-09
Identities = 46/142 (32%), Positives = 67/142 (47%), Gaps = 12/142 (8%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDE-WGQP---------FSWGSDSMGQLGNNLGAHAQDKPKFVKG 394
L +ACG+ H++AI E Q F+WG +LG+ P V
Sbjct: 1361 LKTLKVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGDKNRLGHG-NKETYLLPTCVSS 1419
Query: 395 LATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTR-KCHLQHISSLIGVPI 571
L N Q+ACG +VALT SG +++ G S+GQ G + C +Q L+G +
Sbjct: 1420 LIDYNFNQIACGHTFTVALTTSGHVFTMGGTSHGQLGSSNSDGKLPCLVQ--DRLVGEFV 1477
Query: 572 ALITCGNNHTFVL-SKSRCGFW 634
I+CG++H VL S+S W
Sbjct: 1478 EEISCGDHHVAVLTSRSEVFTW 1499
Score = 55.6 bits (128), Expect = 3e-08
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK----PKFVKG-LATKNVIQVA 424
+ACG H+ A+ G F+WG D + +G L H D PK V G + V+ VA
Sbjct: 1259 VACGEYHTCAVSTSGDLFTWG-DGIHNVG--LLGHGSDLSHWIPKRVSGPVEGLQVLSVA 1315
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTF 604
CG +HS T +G L+++G ++G G + + + + L G+ + CG HT
Sbjct: 1316 CGTWHSALATANGKLFTFGDGAFGVLG-HGDRESVSYPKEVKMLSGLKTLKVACGVWHTV 1374
Query: 605 VL 610
+
Sbjct: 1375 AI 1376
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK-PKFVKG-LATKNVIQVACGA 433
IACG ++A+ G F+ G S GQLG++ ++ K P V+ L + V +++CG
Sbjct: 1428 IACGHTFTVALTTSGHVFTMGGTSHGQLGSS---NSDGKLPCLVQDRLVGEFVEEISCGD 1484
Query: 434 YHSVALTNSGDLYSWGANSYGQCG 505
+H LT+ ++++WG S G+ G
Sbjct: 1485 HHVAVLTSRSEVFTWGKGSNGRLG 1508
Score = 41.1 bits (92), Expect = 7e-04
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 413 IQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGN 592
I +ACG H +T G++++W + G+ G + Q C + + L I + CG
Sbjct: 1205 IDIACGVRHIALVTRQGEVFTWEEEAGGRLGHGI-QVDVCRPKLVEFLALTNIDFVACGE 1263
Query: 593 NHTFVLSKS 619
HT +S S
Sbjct: 1264 YHTCAVSTS 1272
Score = 40.3 bits (90), Expect = 0.001
Identities = 20/62 (32%), Positives = 32/62 (51%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
I+CG H + + F+WG S G+LG+ + P V+ L ++V ++CGA
Sbjct: 1480 ISCGDHHVAVLTSRSEVFTWGKGSNGRLGHG-DKDDRKTPTLVEALRERHVKSISCGADQ 1538
Query: 440 SV 445
SV
Sbjct: 1539 SV 1540
Score = 34.7 bits (76), Expect = 0.058
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
+A G ++ L+ SGH+++ G GQLG + + +GK P LV+
Sbjct: 1428 IACGHTFTVALTTSGHVFTMGGTSHGQLG--SSNSDGKLPCLVQ 1469
>At5g60870.2 68418.m07635 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 383
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLG--NNLGAHAQDKPKFVKGLATKNVIQVACG 430
+++CG ++A+ + GQ ++WG++S +LG +NLG +P V L + Q+ACG
Sbjct: 197 SVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGW---EPMPVPSLEGVRITQIACG 253
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL 610
YHS+ALT G + SWG +GQ G + +K + I +L I I G + + +
Sbjct: 254 GYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTE-IEALADKKIVFIASGGSSSAAI 312
Query: 611 S 613
+
Sbjct: 313 T 313
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWG-SDSMGQLGNNLGAHAQDK-----PKFVKGLATKNVI 415
+ IA H+ AI E G+ + WG + G+LG G + P VK L T V
Sbjct: 138 SAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKAL-TVPVA 196
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNN 595
V+CG + ++ALT G L++WGANS + G + SL GV I I CG
Sbjct: 197 SVSCGGFFTMALTKEGQLWNWGANSNYELG-RGDNLGGWEPMPVPSLEGVRITQIACGGY 255
Query: 596 HTFVLSK 616
H+ L++
Sbjct: 256 HSLALTE 262
Score = 59.3 bits (137), Expect = 2e-09
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Frame = +2
Query: 260 IACGLQHS-LAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL----ATKNVIQVA 424
I+CGL HS L ID G + WG G+LG Q+ FV L ++ +A
Sbjct: 37 ISCGLFHSGLTID--GDLWIWGKGDGGRLG-----FGQENSVFVPNLNPLFEEHSIRCIA 89
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTF 604
G HSVALT+ GD+++WG +G G ++Y TR+ + + I+ I HT
Sbjct: 90 LGGLHSVALTHQGDVFTWGYGGFGALGHKVY-TRELVPRRVDDSWDCKISAIATSGTHTA 148
Query: 605 VLSKS 619
+++S
Sbjct: 149 AITES 153
Score = 58.4 bits (135), Expect = 4e-09
Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T IACG HSLA+ E G+ SWG GQLG++ Q P ++ LA K ++ +A G
Sbjct: 248 TQIACGGYHSLALTEEGKVLSWGHGGHGQLGSS-SLRNQKVPTEIEALADKKIVFIASGG 306
Query: 434 YHSVA-------LTNSGDLYSWGANSYGQCGL 508
S A LT+ G+L+ WG Q G+
Sbjct: 307 SSSAAITGWDWFLTDGGELWMWGNAKDFQLGV 338
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKD 245
E I +A G +HSL L+ G + S G+ GQLG + N K P +E D
Sbjct: 243 EGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG-SSSLRNQKVPTEIEALAD 296
>At5g60870.1 68418.m07636 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 445
Score = 69.3 bits (162), Expect = 2e-12
Identities = 39/121 (32%), Positives = 66/121 (54%), Gaps = 2/121 (1%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLG--NNLGAHAQDKPKFVKGLATKNVIQVACG 430
+++CG ++A+ + GQ ++WG++S +LG +NLG +P V L + Q+ACG
Sbjct: 266 SVSCGGFFTMALTKEGQLWNWGANSNYELGRGDNLGGW---EPMPVPSLEGVRITQIACG 322
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL 610
YHS+ALT G + SWG +GQ G + +K + I +L I I G + + +
Sbjct: 323 GYHSLALTEEGKVLSWGHGGHGQLGSSSLRNQKVPTE-IEALADKKIVFIASGGSSSAAI 381
Query: 611 S 613
+
Sbjct: 382 T 382
Score = 66.9 bits (156), Expect = 1e-11
Identities = 34/85 (40%), Positives = 48/85 (56%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T IACG HSLA+ E G+ SWG GQLG++ Q P ++ LA K ++ +A G
Sbjct: 317 TQIACGGYHSLALTEEGKVLSWGHGGHGQLGSS-SLRNQKVPTEIEALADKKIVFIASGG 375
Query: 434 YHSVALTNSGDLYSWGANSYGQCGL 508
S A+T+ G+L+ WG Q G+
Sbjct: 376 SSSAAITDGGELWMWGNAKDFQLGV 400
Score = 59.7 bits (138), Expect = 2e-09
Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 6/127 (4%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWG-SDSMGQLGNNLGAHAQDK-----PKFVKGLATKNVI 415
+ IA H+ AI E G+ + WG + G+LG G + P VK L T V
Sbjct: 207 SAIATSGTHTAAITESGELYMWGREEGDGRLGLGPGRGPNEGGGLSVPSKVKAL-TVPVA 265
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNN 595
V+CG + ++ALT G L++WGANS + G + SL GV I I CG
Sbjct: 266 SVSCGGFFTMALTKEGQLWNWGANSNYELG-RGDNLGGWEPMPVPSLEGVRITQIACGGY 324
Query: 596 HTFVLSK 616
H+ L++
Sbjct: 325 HSLALTE 331
Score = 59.3 bits (137), Expect = 2e-09
Identities = 41/125 (32%), Positives = 62/125 (49%), Gaps = 5/125 (4%)
Frame = +2
Query: 260 IACGLQHS-LAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGL----ATKNVIQVA 424
I+CGL HS L ID G + WG G+LG Q+ FV L ++ +A
Sbjct: 106 ISCGLFHSGLTID--GDLWIWGKGDGGRLG-----FGQENSVFVPNLNPLFEEHSIRCIA 158
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTF 604
G HSVALT+ GD+++WG +G G ++Y TR+ + + I+ I HT
Sbjct: 159 LGGLHSVALTHQGDVFTWGYGGFGALGHKVY-TRELVPRRVDDSWDCKISAIATSGTHTA 217
Query: 605 VLSKS 619
+++S
Sbjct: 218 AITES 222
Score = 35.1 bits (77), Expect = 0.044
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +3
Query: 81 ESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKD 245
E I +A G +HSL L+ G + S G+ GQLG + N K P +E D
Sbjct: 312 EGVRITQIACGGYHSLALTEEGKVLSWGHGGHGQLG-SSSLRNQKVPTEIEALAD 365
>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1081
Score = 64.9 bits (151), Expect = 5e-11
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGN-----NLGAHAQDKPK-FVKGLATKNVIQVACGAYH 439
HS+AI G+ ++WG G+LG+ + G A P+ + GL ++ V VA +H
Sbjct: 197 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 256
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+V T GD+Y+WG+N GQ G T+ + ++SL I ++ N HT V+S
Sbjct: 257 TVIATEGGDVYTWGSNREGQLGYTSVDTQATP-RKVTSL-KAKIVAVSAANKHTAVVSD- 313
Query: 620 RCG 628
CG
Sbjct: 314 -CG 315
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+A H++ E G ++WGS+ GQLG Q P+ V L K ++ V+ H
Sbjct: 250 VAAAKHHTVIATEGGDVYTWGSNREGQLGYT-SVDTQATPRKVTSLKAK-IVAVSAANKH 307
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH-ISSLIGVPIALITCGNNHTFVL 610
+ +++ G++++WG N GQ G + + + L G I HT VL
Sbjct: 308 TAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVL 365
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQD-KPKFVKGLATKNVIQVACGAY 436
++ +H+ + + G+ F+WG + GQLG A + P+ V L K +A Y
Sbjct: 301 VSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKY 360
Query: 437 HSVALTNSGDLYSWG 481
H++ L N G++Y+WG
Sbjct: 361 HTLVLRNDGEVYTWG 375
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 311 FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANS 490
FSWG+ + QLG H Q P V L + V+ +HSVA++ G++Y+WG
Sbjct: 156 FSWGNGANYQLGTG-NQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGR 214
Query: 491 YGQCG 505
G+ G
Sbjct: 215 GGRLG 219
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
L T IA G+ HSLA+ E G F W S +NL + L K V+ ++
Sbjct: 406 LRLTAIAAGMVHSLALAEDGAFFYWVSSD-----SNLRCQQ------LHSLHGKTVVSIS 454
Query: 425 CGAYHSVALTNSGDLYSW 478
G Y + A+T++G++Y W
Sbjct: 455 AGKYWASAVTSTGEVYMW 472
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 84 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFK 242
S ++AVAA + H++ + G +Y+ G+N GQLG T D P V + K
Sbjct: 244 SRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQLG-YTSVDTQATPRKVTSLK 295
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 167
P L + + A+A+ ++H+L L N G +Y+ G+
Sbjct: 341 PRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGH 376
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQ----LGNNLGAHAQDKPKFVKGLATKNVIQV 421
T IA H+L + G+ ++WG + + NL F + + + +
Sbjct: 353 TAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKKAGNTLLNFHRRRPLR-LTAI 411
Query: 422 ACGAYHSVALTNSGDLYSW 478
A G HS+AL G + W
Sbjct: 412 AAGMVHSLALAEDGAFFYW 430
>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
of chromosome condensation (RCC1) family protein similar
to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
contains Pfam PF00415: Regulator of chromosome
condensation (RCC1); contains Pfam PF00023: Ankyrin
repeat; similar to rjs (GI:3414809) [Mus musculus];
similar to HERC2 (GI:4079809) [Homo sapiens]
Length = 1078
Score = 64.9 bits (151), Expect = 5e-11
Identities = 41/123 (33%), Positives = 64/123 (52%), Gaps = 6/123 (4%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGN-----NLGAHAQDKPK-FVKGLATKNVIQVACGAYH 439
HS+AI G+ ++WG G+LG+ + G A P+ + GL ++ V VA +H
Sbjct: 194 HSVAISTHGEVYTWGFGRGGRLGHPEFDIHSGQAAVITPRQVISGLGSRRVKAVAAAKHH 253
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+V T GD+Y+WG+N GQ G T+ + ++SL I ++ N HT V+S
Sbjct: 254 TVIATEGGDVYTWGSNREGQLGYTSVDTQATP-RKVTSL-KAKIVAVSAANKHTAVVSD- 310
Query: 620 RCG 628
CG
Sbjct: 311 -CG 312
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 1/118 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+A H++ E G ++WGS+ GQLG Q P+ V L K ++ V+ H
Sbjct: 247 VAAAKHHTVIATEGGDVYTWGSNREGQLGYT-SVDTQATPRKVTSLKAK-IVAVSAANKH 304
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH-ISSLIGVPIALITCGNNHTFVL 610
+ +++ G++++WG N GQ G + + + L G I HT VL
Sbjct: 305 TAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKYHTLVL 362
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQD-KPKFVKGLATKNVIQVACGAY 436
++ +H+ + + G+ F+WG + GQLG A + P+ V L K +A Y
Sbjct: 298 VSAANKHTAVVSDCGEVFTWGCNKEGQLGYGTSNSASNYSPRLVDYLKGKVFTAIASSKY 357
Query: 437 HSVALTNSGDLYSWG 481
H++ L N G++Y+WG
Sbjct: 358 HTLVLRNDGEVYTWG 372
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/65 (35%), Positives = 34/65 (52%)
Frame = +2
Query: 311 FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANS 490
FSWG+ + QLG H Q P V L + V+ +HSVA++ G++Y+WG
Sbjct: 153 FSWGNGANYQLGTG-NQHVQKVPGRVDSLHGCFIKLVSAAKFHSVAISTHGEVYTWGFGR 211
Query: 491 YGQCG 505
G+ G
Sbjct: 212 GGRLG 216
Score = 39.9 bits (89), Expect = 0.002
Identities = 26/78 (33%), Positives = 39/78 (50%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
L T IA G+ HSLA+ E G F W S +NL + L K V+ ++
Sbjct: 403 LRLTAIAAGMVHSLALAEDGAFFYWVSSD-----SNLRCQQ------LHSLHGKTVVSIS 451
Query: 425 CGAYHSVALTNSGDLYSW 478
G Y + A+T++G++Y W
Sbjct: 452 AGKYWASAVTSTGEVYMW 469
Score = 36.3 bits (80), Expect = 0.019
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 84 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFK 242
S ++AVAA + H++ + G +Y+ G+N GQLG T D P V + K
Sbjct: 241 SRRVKAVAAAKHHTVIATEGGDVYTWGSNREGQLG-YTSVDTQATPRKVTSLK 292
Score = 28.3 bits (60), Expect = 5.1
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGN 167
P L + + A+A+ ++H+L L N G +Y+ G+
Sbjct: 338 PRLVDYLKGKVFTAIASSKYHTLVLRNDGEVYTWGH 373
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 4/79 (5%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQ----LGNNLGAHAQDKPKFVKGLATKNVIQV 421
T IA H+L + G+ ++WG + + NL F + + + +
Sbjct: 350 TAIASSKYHTLVLRNDGEVYTWGHRLVTPRRVIISRNLKKAGNTLLNFHRRRPLR-LTAI 408
Query: 422 ACGAYHSVALTNSGDLYSW 478
A G HS+AL G + W
Sbjct: 409 AAGMVHSLALAEDGAFFYW 427
>At3g55580.1 68416.m06171 regulator of chromosome condensation
(RCC1) family protein UVB-resistance protein UVR8,
Arabidopsis thaliana, EMBL:AF130441; contains Pfam
PF00415: Regulator of chromosome condensation (RCC1)
domain
Length = 488
Score = 63.7 bits (148), Expect = 1e-10
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 1/119 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG +HS I + G ++G GQ G + P V L + +VA G +H
Sbjct: 316 IACGGRHSAVITDTGALLTFGWGLYGQCGQG-STDDELSPTCVSSLLGIRIEEVAAGLWH 374
Query: 440 SVALTNSGDLYSWGANSYGQCGLELYQTRKC-HLQHISSLIGVPIALITCGNNHTFVLS 613
+ ++ GD+Y++G N +GQ G Q L +L V + I+CG HT V++
Sbjct: 375 TTCASSDGDVYAFGGNQFGQLGTGCDQAETLPKLLEAPNLENVNVKTISCGARHTAVIT 433
Score = 61.7 bits (143), Expect = 4e-10
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKG--LATKNVIQVACGA 433
+A GL H+ G +++G + GQLG A+ PK ++ L NV ++CGA
Sbjct: 368 VAAGLWHTTCASSDGDVYAFGGNQFGQLGTGCD-QAETLPKLLEAPNLENVNVKTISCGA 426
Query: 434 YHSVALTNSGDLYSWGANSYGQCGL 508
H+ +T+ G ++ WG N YGQ G+
Sbjct: 427 RHTAVITDEGRVFCWGWNKYGQLGI 451
Score = 50.0 bits (114), Expect = 1e-06
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 24/139 (17%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFV-------------KGL 397
++A G +H+LA+ + GQ + WG GQLG P + G+
Sbjct: 238 SVAAGGRHTLALSDIGQVWGWGYGGEGQLGLGSRVRLVSSPHPIPCIEPSSYGKATSSGV 297
Query: 398 ATKNVIQ-----------VACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQH 544
+V+Q +ACG HS +T++G L ++G YGQCG + +
Sbjct: 298 NMSSVVQCGRVLGSYVKKIACGGRHSAVITDTGALLTFGWGLYGQCG-QGSTDDELSPTC 356
Query: 545 ISSLIGVPIALITCGNNHT 601
+SSL+G+ I + G HT
Sbjct: 357 VSSLLGIRIEEVAAGLWHT 375
Score = 41.1 bits (92), Expect = 7e-04
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Frame = +2
Query: 233 NI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQL--GNNLGAHAQDKPKFVKGLATK 406
N+ ++ TI+CG +H+ I + G+ F WG + GQL G+ + +A + + +K K
Sbjct: 413 NLENVNVKTISCGARHTAVITDEGRVFCWGWNKYGQLGIGDVIDRNAPAEVR-IKDCFPK 471
Query: 407 NVIQVACGAYHSVAL 451
N +ACG +H++ L
Sbjct: 472 N---IACGWWHTLLL 483
Score = 37.5 bits (83), Expect = 0.008
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +3
Query: 30 GSQITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDN 209
G TD + PT I+ VAAG +H+ S+ G +Y+ G N GQLG T D
Sbjct: 344 GQGSTDDELSPTCVSSLLGIRIEEVAAGLWHTTCASSDGDVYAFGGNQFGQLG--TGCDQ 401
Query: 210 GKN-PALVE 233
+ P L+E
Sbjct: 402 AETLPKLLE 410
Score = 31.9 bits (69), Expect = 0.41
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = +3
Query: 45 DLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
DL P L I +VAAG H+L LS+ G ++ G GQLG
Sbjct: 220 DLSALPCLVSLAPGVRIVSVAAGGRHTLALSDIGQVWGWGYGGEGQLG 267
>At1g65920.1 68414.m07480 regulator of chromosome condensation
(RCC1) family protein / zinc finger protein-related
contains Pfam profiles: regulator of chromosome
condensation (RCC1), PF01363 FYVE zinc finger
Length = 1006
Score = 63.3 bits (147), Expect = 1e-10
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 4/125 (3%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+I+ G +H+ + G+ F WG+ + G+LG + D PK V+ L V VAC +
Sbjct: 296 SISLGAKHAALVTRQGEVFCWGNGNSGKLGLKVNIDI-DHPKRVESLEDVAVRSVACSDH 354
Query: 437 HSVALTNSGDLYSWG--ANSYGQCGLELYQTRKCHLQHISSLIG--VPIALITCGNNHTF 604
+ A+T SG+LY WG + Q G + + TRK IS ++G + + + CG HT
Sbjct: 355 QTCAVTESGELYLWGIDGGTIEQSGSQ-FLTRK-----ISDVLGGSLTVLSVACGAWHTA 408
Query: 605 VLSKS 619
+++ S
Sbjct: 409 IVTSS 413
Score = 61.3 bits (142), Expect = 6e-10
Identities = 42/140 (30%), Positives = 65/140 (46%), Gaps = 12/140 (8%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
++ACG H+ + GQ F++GS + G LG+ + KPK V+ L VI V+CG +
Sbjct: 399 SVACGAWHTAIVTSSGQLFTYGSGTFGVLGHG-SLESVTKPKEVESLRRMKVISVSCGPW 457
Query: 437 HSVALTNS------------GDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALI 580
H+ A+ + G L++WG G+ G RK ++ LI +
Sbjct: 458 HTAAIVETANDRKFYNAKSCGKLFTWGDGDKGRLG-HADSKRKLVPTCVTELIDHDFIKV 516
Query: 581 TCGNNHTFVLSKSRCGFWMG 640
+CG T LS S + MG
Sbjct: 517 SCGWTLTVALSISGTVYTMG 536
Score = 55.6 bits (128), Expect = 3e-08
Identities = 32/115 (27%), Positives = 60/115 (52%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
++AC + A+ E G+ + WG D G + + K V G + V+ VACGA+
Sbjct: 348 SVACSDHQTCAVTESGELYLWGIDG-GTIEQSGSQFLTRKISDVLG-GSLTVLSVACGAW 405
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
H+ +T+SG L+++G+ ++G G ++ + + SL + + ++CG HT
Sbjct: 406 HTAIVTSSGQLFTYGSGTFGVLGHGSLES-VTKPKEVESLRRMKVISVSCGPWHT 459
Score = 50.4 bits (115), Expect = 1e-06
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKP-KFVKGLATKNVIQ-VACGA 433
++CG ++A+ G ++ GS GQLG A+DK V G T+ ++ +A G+
Sbjct: 516 VSCGWTLTVALSISGTVYTMGSSIHGQLG---CPRAKDKSVNVVLGNLTRQFVKDIASGS 572
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHT 601
+H LT+ G++Y+WG GQ GL + R + + L + I CG N T
Sbjct: 573 HHVAVLTSFGNVYTWGKGMNGQLGLGDVRDRNSPVL-VEPLGDRLVESIACGLNLT 627
Score = 47.6 bits (108), Expect = 8e-06
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Frame = +2
Query: 302 GQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNV----IQVACGAYHSVALTNSGDL 469
G+ F+WG G+LG HA K K V T+ + I+V+CG +VAL+ SG +
Sbjct: 478 GKLFTWGDGDKGRLG-----HADSKRKLVPTCVTELIDHDFIKVSCGWTLTVALSISGTV 532
Query: 470 YSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
Y+ G++ +GQ G + + ++ + +L + I G++H VL+
Sbjct: 533 YTMGSSIHGQLGCPRAKDKSVNVV-LGNLTRQFVKDIASGSHHVAVLT 579
Score = 44.8 bits (101), Expect = 5e-05
Identities = 23/101 (22%), Positives = 51/101 (50%)
Frame = +2
Query: 317 WGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYG 496
WG+ + G + + + PK ++ +V ++ GA H+ +T G+++ WG + G
Sbjct: 264 WGAIT-GLIDGSKNQNDALSPKLLESATMFDVQSISLGAKHAALVTRQGEVFCWGNGNSG 322
Query: 497 QCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSKS 619
+ GL++ H + + SL V + + C ++ T +++S
Sbjct: 323 KLGLKV-NIDIDHPKRVESLEDVAVRSVACSDHQTCAVTES 362
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 1/103 (0%)
Frame = +2
Query: 230 GNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLG-AHAQDKPKFVKGLATK 406
GN+ R IA G H + +G ++WG GQLG LG ++ P V+ L +
Sbjct: 558 GNLTRQFVKDIASGSHHVAVLTSFGNVYTWGKGMNGQLG--LGDVRDRNSPVLVEPLGDR 615
Query: 407 NVIQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCH 535
V +ACG + A+ ++ + C TR+ H
Sbjct: 616 LVESIACGLNLTAAICLHKEISLNDQTACSSCKSAFGFTRRKH 658
>At1g19880.1 68414.m02493 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 538
Score = 62.5 bits (145), Expect = 3e-10
Identities = 28/81 (34%), Positives = 46/81 (56%)
Frame = +2
Query: 266 CGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSV 445
C H +A+D G+ ++WG + GQLG+ +D+P V GL+ +++ A G H+V
Sbjct: 65 CASFHCVALDVEGRCYTWGRNEKGQLGHG-DMIQRDRPTVVSGLSKHKIVKAAAGRNHTV 123
Query: 446 ALTNSGDLYSWGANSYGQCGL 508
+++ G +G N YGQ GL
Sbjct: 124 VVSDDGQSLGFGWNKYGQLGL 144
Score = 57.2 bits (132), Expect = 1e-08
Identities = 41/159 (25%), Positives = 76/159 (47%), Gaps = 20/159 (12%)
Frame = +2
Query: 254 TTIACGLQHS--LAIDEWGQPFSWGSDSMGQLGNN-------------LGAHAQDKPKFV 388
T +ACG + L+ E + G GQLG+ L AQ +PK +
Sbjct: 170 TNVACGADFTVWLSSTEGASILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAI 229
Query: 389 KGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG----LELYQTRKCHLQHISSL 556
LA + +++VACG H+VA+ +G +Y+WG YG+ G + + R+ + +++
Sbjct: 230 ASLAGETIVKVACGTNHTVAVDKNGYVYTWGFGGYGRLGHREQKDEWAPRRIDVFQRNNV 289
Query: 557 IGVPIALITCGN-NHTFVLSKSRCGFWMG*KHSWDNWVF 670
+ P A+++ G+ N + W K++ D+W++
Sbjct: 290 L-PPNAILSAGSANSACTAGGGQLYMWGKIKNNGDDWMY 327
Score = 41.5 bits (93), Expect = 5e-04
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Frame = +2
Query: 293 DEWGQPFSWGSDSMGQLGNNLGAHAQD--KPKFVKGLATKNVIQVA--CGAYHSVALTNS 460
++ G+ G+ + +G GA + P ++ L N+ VA C ++H VAL
Sbjct: 17 EKGGELLFCGATAWDIIGKRKGAMEGNLVSPTRLRPLVGVNIRFVATGCASFHCVALDVE 76
Query: 461 GDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLS 613
G Y+WG N GQ G ++ Q + + +S L I G NHT V+S
Sbjct: 77 GRCYTWGRNEKGQLGHGDMIQRDRPTV--VSGLSKHKIVKAAAGRNHTVVVS 126
Score = 33.9 bits (74), Expect = 0.10
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = +2
Query: 314 SWGSDSMGQLGNNL-GAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNSGDL 469
SWG G+LG G + PK V L +V+ VACG HS+ + + D+
Sbjct: 359 SWGHAQYGELGYGPNGQKSSAAPKKVDMLEGMHVMGVACGFCHSMVIVDRTDI 411
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 51 VIKPTLSKWKESDHIQAVAAG--EFHSLYLSNSGHLYSCGNNDVGQLG 188
++ PT + +I+ VA G FH + L G Y+ G N+ GQLG
Sbjct: 44 LVSPTRLRPLVGVNIRFVATGCASFHCVALDVEGRCYTWGRNEKGQLG 91
Score = 29.1 bits (62), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLG 188
+PT+ I AAG H++ +S+ G G N GQLG
Sbjct: 100 RPTVVSGLSKHKIVKAAAGRNHTVVVSDDGQSLGFGWNKYGQLG 143
>At1g27060.1 68414.m03299 regulator of chromosome condensation
(RCC1) family protein low similiarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 386
Score = 60.9 bits (141), Expect = 8e-10
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
+ACG H +A+ G+ F+WG S GQLG+ + PK V + Q A G H
Sbjct: 53 LACGGAHVIALTSGGKVFTWGRGSSGQLGHGDILNI-TLPKLVSFFDDSVITQAAAGWSH 111
Query: 440 SVALTNSGDLYSWGANSYGQCGL--ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL- 610
S +++SG +++ G S+GQ G L + + H ++ + ++ CG H+ VL
Sbjct: 112 SGFVSDSGCIFTCGNGSFGQLGHGDTLSLSTPAKVSHFNN---DSVKMVACGMRHSLVLF 168
Query: 611 -SKSRCGFWMG 640
CGF G
Sbjct: 169 AGNQVCGFGSG 179
Score = 53.6 bits (123), Expect = 1e-07
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 1/121 (0%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLG-NNLGAHAQDKPKFVKGLATKNVIQVACGAY 436
+ACG++HSL + Q +GS GQLG ++ + + P V GL V++++
Sbjct: 157 VACGMRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGD 216
Query: 437 HSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFVLSK 616
HS A++ G +SWG G + Q+ L +G AL+ + F L
Sbjct: 217 HSAAISADGQFFSWGRGFCGGPDVHAPQSLPSPLSFREVAVGWNHALLLTVDGEVFKLGS 276
Query: 617 S 619
+
Sbjct: 277 T 277
Score = 51.6 bits (118), Expect = 5e-07
Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Frame = +2
Query: 293 DEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATKNVIQVACGAYHSVALTNSGD 466
+E Q +SWG+ + GQLG QD+ P+ + + ++ +ACG H +ALT+ G
Sbjct: 12 EEEEQVWSWGAGTDGQLGTT---KLQDELLPQLLSLTSLPSISMLACGGAHVIALTSGGK 68
Query: 467 LYSWGANSYGQCG 505
+++WG S GQ G
Sbjct: 69 VFTWGRGSSGQLG 81
Score = 49.6 bits (113), Expect = 2e-06
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 1/121 (0%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGA 433
T A G HS + + G F+ G+ S GQLG+ + P V +V VACG
Sbjct: 103 TQAAAGWSHSGFVSDSGCIFTCGNGSFGQLGHG-DTLSLSTPAKVSHFNNDSVKMVACGM 161
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQ-HISSLIGVPIALITCGNNHTFVL 610
HS+ L + +G+ GQ G + + +L +S L V + I+ +H+ +
Sbjct: 162 RHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEVVRISANGDHSAAI 221
Query: 611 S 613
S
Sbjct: 222 S 222
Score = 43.2 bits (97), Expect = 2e-04
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 2/85 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVK--GLATKNVIQVACGA 433
+A G H+L + G+ F GS Q + F K V+Q+A GA
Sbjct: 255 VAVGWNHALLLTVDGEVFKLGSTLNKQPEKQQLQIDSSEALFEKVPDFDGVKVMQIAAGA 314
Query: 434 YHSVALTNSGDLYSWGANSYGQCGL 508
HS A+T +G++ +WG +GQ GL
Sbjct: 315 EHSAAVTENGEVKTWGWGEHGQLGL 339
Score = 40.7 bits (91), Expect = 9e-04
Identities = 22/66 (33%), Positives = 37/66 (56%)
Frame = +3
Query: 60 PTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETF 239
P L + + I AAG HS ++S+SG +++CGN GQLG ++ + PA V F
Sbjct: 91 PKLVSFFDDSVITQAAAGWSHSGFVSDSGCIFTCGNGSFGQLG-HGDTLSLSTPAKVSHF 149
Query: 240 KDCTIR 257
+ +++
Sbjct: 150 NNDSVK 155
Score = 30.3 bits (65), Expect = 1.3
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +3
Query: 84 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKN-PALVETFKDCTI 254
+D ++ VA G HSL L + G+ GQLG ++ N P +V KD +
Sbjct: 151 NDSVKMVACGMRHSLVLFAGNQVCGFGSGKRGQLGFSSDRIKSVNLPCVVSGLKDVEV 208
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 230
+ +AAG HS ++ +G + + G + GQLG +D +P LV
Sbjct: 307 VMQIAAGAEHSAAVTENGEVKTWGWGEHGQLGLGNTNDQ-TSPELV 351
>At5g48330.1 68418.m05970 regulator of chromosome condensation
(RCC1) family protein contains Pfam PF00415:Regulator of
chromosome condensation (RCC1) domain (5 copies);
similar to UVB-resistance protein UVR8 (GI:5478530)
{Arabidopsis thaliana)
Length = 455
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Frame = +2
Query: 254 TTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQD---KPKFVKGLATKNVIQVA 424
++I+ G HSLA+ G+ ++WG + GQLG + ++D +PK V+GL NV
Sbjct: 85 SSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKRVEGLENVNVQAAF 144
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCGL 508
S A+ + G L+ WG + GQ GL
Sbjct: 145 ASGVVSAAIGDDGSLWVWGRSKRGQLGL 172
Score = 52.4 bits (120), Expect = 3e-07
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQP--FSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACG 430
+IA GL HSLAI G+ SWG + QLG ++ P+ V+G ++ V+ G
Sbjct: 338 SIAAGLGHSLAICNRGERNILSWGWNRSRQLGRG---KPENLPREVEGFDGESPASVSAG 394
Query: 431 AYHSVALTNSGDLYSWGANSYGQCGL 508
HS+ +T G+ + WG G+ GL
Sbjct: 395 RVHSLCVTEKGEAWVWGCGKNGRLGL 420
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/75 (36%), Positives = 41/75 (54%)
Frame = +2
Query: 281 SLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTNS 460
S AI + G + WG GQLG G P V+ LA ++V++V+ G H++ALT
Sbjct: 150 SAAIGDDGSLWVWGRSKRGQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVD 209
Query: 461 GDLYSWGANSYGQCG 505
G ++ WG + G+ G
Sbjct: 210 GKVFGWGYVADGRVG 224
Score = 46.8 bits (106), Expect = 1e-05
Identities = 32/97 (32%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGR---QTESDNGKNPAL 227
+PT+ SD I +++AG +HSL +++SG +++ G ND GQLGR + D+ P
Sbjct: 73 EPTVVSNLPSD-ISSISAGHYHSLAVTSSGEIWAWGRNDEGQLGRIVIDSSRDSRSEPKR 131
Query: 228 VETFKDCTIRQ*HVAFNIL*L*MNGDSLSVGALTVWG 338
VE ++ + Q A ++ + D G+L VWG
Sbjct: 132 VEGLENVNV-QAAFASGVVSAAIGDD----GSLWVWG 163
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 5/69 (7%)
Frame = +2
Query: 314 SWGSDSMGQLG---NNLGAHAQD--KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSW 478
S+G ++G LG +++ D +P V L + ++ ++ G YHS+A+T+SG++++W
Sbjct: 48 SFGDGNLGALGLSSSSIPGMGMDAYEPTVVSNLPS-DISSISAGHYHSLAVTSSGEIWAW 106
Query: 479 GANSYGQCG 505
G N GQ G
Sbjct: 107 GRNDEGQLG 115
Score = 45.6 bits (103), Expect = 3e-05
Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYH 439
IACG HSL + G S GS+ GQLG + KP + T++ I +A G H
Sbjct: 291 IACGSDHSLILCHDGTLLSAGSNIYGQLGRSKQDLGM-KPVDI----TESPISIAAGLGH 345
Query: 440 SVALTNSGD--LYSWGANSYGQCG 505
S+A+ N G+ + SWG N Q G
Sbjct: 346 SLAICNRGERNILSWGWNRSRQLG 369
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +2
Query: 374 KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
+P V+ + V +ACG+ HS+ L + G L S G+N YGQ G
Sbjct: 276 EPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLG 319
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/55 (38%), Positives = 31/55 (56%)
Frame = +3
Query: 57 KPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNP 221
+P L + ++ + +A G HSL L + G L S G+N GQLGR ++ D G P
Sbjct: 276 EPCLVEETCNEKVADIACGSDHSLILCHDGTLLSAGSNIYGQLGR-SKQDLGMKP 329
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = +2
Query: 176 GSVRTSN*I*QWKESSFSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGN 349
G + N I + + S N+ H ++ G H+LA+ G+ F WG + G++GN
Sbjct: 168 GQLGLGNGIIEARVPSRVENLAAEHVVKVSLGWGHALALTVDGKVFGWGYVADGRVGN 225
>At5g11580.1 68418.m01350 UVB-resistance protein-related / regulator
of chromosome condensation (RCC1) family protein
contains Pfam PF00415 : Regulator of chromosome
condensation (RCC1); similar to rjs protein (GI:3414809)
[Mus musculus]; similar to HERC2 (GI:4079809) [Homo
sapiens];similar to UVB-resistance protein UVR8
(GI:10177674) {Arabidopsis thaliana}
Length = 553
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 5/90 (5%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSDSMGQLG-----NNLGAHAQDKPKFVKGLATKNVIQV 421
++A G H++A+ G +SWG G+LG + L + P +G + ++ V
Sbjct: 20 SLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDELVPVLVEFPNQAEGDRIR-IVGV 78
Query: 422 ACGAYHSVALTNSGDLYSWGANSYGQCGLE 511
A GAYHS+A+++ G ++ WG N YGQ G +
Sbjct: 79 AAGAYHSLAVSDDGSVWCWGYNIYGQLGFD 108
Score = 50.4 bits (115), Expect = 1e-06
Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 15/134 (11%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGS--DSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACG 430
T+ G SLAID G + WG+ + L + P + + V++VACG
Sbjct: 146 TVKAGSMMSLAIDNVGGLWMWGNVPPQDSEPDPRLSFTSIPIPFPILDFHGRTVLKVACG 205
Query: 431 AYHSVALTNSGD-----------LYSWGANSYGQCGL--ELYQTRKCHLQHISSLIGVPI 571
H VAL GD LYSWG N +GQ GL + R ++ + G+ +
Sbjct: 206 DEHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLGLGDGESRARPQTVETFNQKSGLTV 265
Query: 572 ALITCGNNHTFVLS 613
I CG +HT +L+
Sbjct: 266 YDIACGAHHTALLT 279
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/91 (28%), Positives = 47/91 (51%), Gaps = 8/91 (8%)
Frame = +2
Query: 257 TIACGLQHSLAIDEWGQPFSWGSD-SMGQLGN----NLGAHAQDKPKFVKGLAT--KNVI 415
++ CGL H+ + G +SWG + +G + + A P+ + G ++ ++ +
Sbjct: 327 SVDCGLFHTSVVSSEGYVWSWGMERGLGLCPDVNFTEVEAGDDSVPRKISGGSSRFRDPV 386
Query: 416 QVACGAYHSVALTNSG-DLYSWGANSYGQCG 505
QV+CGA H+V + + G L+SWG G G
Sbjct: 387 QVSCGAAHTVLVVDGGYKLWSWGRGRNGVLG 417
Score = 39.5 bits (88), Expect = 0.002
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = +2
Query: 401 TKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
++ +I +A G H++ALT G +YSWG +G+ G
Sbjct: 15 SRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLG 49
Score = 37.1 bits (82), Expect = 0.011
Identities = 22/50 (44%), Positives = 29/50 (58%)
Frame = +3
Query: 84 SDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
S I ++AAGE H++ L+ G +YS G G+LG ESD P LVE
Sbjct: 15 SRKIISLAAGEAHTIALTGDGCVYSWGRGMFGRLGTGKESDE-LVPVLVE 63
Score = 36.7 bits (81), Expect = 0.014
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +3
Query: 81 ESDHIQ--AVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVE 233
E D I+ VAAG +HSL +S+ G ++ G N GQLG + +N P L++
Sbjct: 69 EGDRIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLG--FDGENSLAPCLIK 119
Score = 34.7 bits (76), Expect = 0.058
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 16/96 (16%)
Frame = +2
Query: 242 RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQL---GNNLGAHAQDKPKFVKGLATKN- 409
R+ +A G HSLA+ + G + WG + GQL G N A K F + ++ +
Sbjct: 72 RIRIVGVAAGAYHSLAVSDDGSVWCWGYNIYGQLGFDGENSLAPCLIKNLFERETSSSSL 131
Query: 410 ------------VIQVACGAYHSVALTNSGDLYSWG 481
V V G+ S+A+ N G L+ WG
Sbjct: 132 NDSGREVGSDLKVCTVKAGSMMSLAIDNVGGLWMWG 167
Score = 32.7 bits (71), Expect = 0.24
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)
Frame = +2
Query: 260 IACGLQHSLAID-----EWGQPFSW--GSDSMGQLGNNLGAHAQDKPKFVKGLATKN-VI 415
IACG H+ + G W G GQLG+ + P+ V L ++
Sbjct: 268 IACGAHHTALLTYRKETPKGPSICWTFGFGENGQLGHRSNK-SSSLPEPVSDLPEHAYLV 326
Query: 416 QVACGAYHSVALTNSGDLYSWG 481
V CG +H+ +++ G ++SWG
Sbjct: 327 SVDCGLFHTSVVSSEGYVWSWG 348
Score = 31.9 bits (69), Expect = 0.41
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +3
Query: 87 DHIQA-VAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETF 239
+H+ A V G+ H + LYS GNN GQLG + ++ P VETF
Sbjct: 207 EHVVALVGPGDIHKDNSYDVSVLYSWGNNHHGQLG-LGDGESRARPQTVETF 257
>At3g26100.2 68416.m03250 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 532
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Frame = +2
Query: 242 RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVI 415
R + G HS+A+ G+ +++G ++ GQLG+ H +D+ + V+ L +I
Sbjct: 142 RREKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHG---HTEDEARIQPVRSLQGVRII 198
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL-QHISSLIGVPIALITCGN 592
Q A GA ++ +++ G +Y+ G S+G+ T+ Q ++SL + + GN
Sbjct: 199 QAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGN 258
Query: 593 NHTFVLSK 616
T VLS+
Sbjct: 259 YFTAVLSR 266
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
L +A G H+ + + G+ +WG G LG+ + PK V+GL+ + VA
Sbjct: 359 LQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKVVEGLSHVKAVHVA 417
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
G Y + +++ GD+YS+G G
Sbjct: 418 TGDYTTFVVSDDGDVYSFGCGESASLG 444
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 96 QAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGK 215
QAVA G HS+ +++ G +Y+ G N+ GQLG D +
Sbjct: 147 QAVA-GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEAR 185
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQ 182
IQA AAG ++ +S+ G +Y+CG G+
Sbjct: 198 IQA-AAGAARTMLISDDGKVYACGKESFGE 226
>At3g26100.1 68416.m03251 regulator of chromosome condensation
(RCC1) family protein weak similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 432
Score = 55.2 bits (127), Expect = 4e-08
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Frame = +2
Query: 242 RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVI 415
R + G HS+A+ G+ +++G ++ GQLG+ H +D+ + V+ L +I
Sbjct: 42 RREKSQAVAGPGHSVAVTSKGEVYTFGYNNSGQLGHG---HTEDEARIQPVRSLQGVRII 98
Query: 416 QVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHL-QHISSLIGVPIALITCGN 592
Q A GA ++ +++ G +Y+ G S+G+ T+ Q ++SL + + GN
Sbjct: 99 QAAAGAARTMLISDDGKVYACGKESFGEAEYGGQGTKPVTTPQLVTSLKNIFVVQAAIGN 158
Query: 593 NHTFVLSK 616
T VLS+
Sbjct: 159 YFTAVLSR 166
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/87 (28%), Positives = 42/87 (48%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
L +A G H+ + + G+ +WG G LG+ + PK V+GL+ + VA
Sbjct: 259 LQPRVVAAGAWHAAVVGQDGRVCTWGWGRYGCLGHG-NEECESVPKVVEGLSHVKAVHVA 317
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
G Y + +++ GD+YS+G G
Sbjct: 318 TGDYTTFVVSDDGDVYSFGCGESASLG 344
Score = 31.5 bits (68), Expect = 0.54
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 96 QAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGK 215
QAVA G HS+ +++ G +Y+ G N+ GQLG D +
Sbjct: 47 QAVA-GPGHSVAVTSKGEVYTFGYNNSGQLGHGHTEDEAR 85
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQ 182
IQA AAG ++ +S+ G +Y+CG G+
Sbjct: 98 IQA-AAGAARTMLISDDGKVYACGKESFGE 126
>At3g15430.2 68416.m01958 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 47.6 bits (108), Expect = 8e-06
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAY 436
+A GL ++ + G ++ GS++ GQLG+ + PK V+ L T V+Q+A G
Sbjct: 221 VAAGLHFTVFLSREGHAYTCGSNTHGQLGHG-DTLDRPVPKVVEFLKTIGPVVQIAAGPS 279
Query: 437 HSVALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL- 610
+ +A+T G +YS+G+ S G E + + G+ I ++ G+ H L
Sbjct: 280 YVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALD 339
Query: 611 SKSRCGFW 634
S R W
Sbjct: 340 SNGRVYTW 347
Score = 46.4 bits (105), Expect = 2e-05
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATK--NVIQVAC 427
IA G + LA+ + G +S+GS S LG+ QD+ P+ ++ K ++++V+
Sbjct: 274 IAAGPSYVLAVTQDGSVYSFGSGSNFCLGHG---EQQDELQPRVIQAFKRKGIHILRVSA 330
Query: 428 GAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFV 607
G H+VAL ++G +Y+WG G G + K Q + +L + TFV
Sbjct: 331 GDEHAVALDSNGRVYTWGKGYCGALG-HGDENDKITPQVLVNLNNCLAVQVCARKRKTFV 389
Query: 608 LSKSRC--GF-WMG 640
L + GF WMG
Sbjct: 390 LVEGGLLYGFGWMG 403
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 51 VIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 230
+ +P L + + + VAAG +++LS GH Y+CG+N GQLG D P +V
Sbjct: 204 IFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDR-PVPKVV 262
Query: 231 ETFK 242
E K
Sbjct: 263 EFLK 266
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTN 457
HS + + GQ + G +S G+ + +PK V+ L QVA G + +V L+
Sbjct: 174 HSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSR 233
Query: 458 SGDLYSWGANSYGQCG 505
G Y+ G+N++GQ G
Sbjct: 234 EGHAYTCGSNTHGQLG 249
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
+H ++ G +H++A+D G+ ++WG G LG+ + + P+ + L +QV
Sbjct: 323 IHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHG-DENDKITPQVLVNLNNCLAVQVC 381
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
+ L G LY +G +G G
Sbjct: 382 ARKRKTFVLVEGGLLYGFGWMGFGSLG 408
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 90 HIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDC 248
HI V+AG+ H++ L ++G +Y+ G G LG E+D P ++ +C
Sbjct: 324 HILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDK-ITPQVLVNLNNC 375
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +3
Query: 39 ITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQT 197
++D V++P + + + + V+ G +H++ ++ G ++ G+N+ QLG +
Sbjct: 414 VSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 374 KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
+P+ ++ L V QV+ G YH++ +T G ++ +G N Q G
Sbjct: 420 RPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLG 463
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIRQ 260
+ V+A + HS ++ SG + +CG+N G S P LVE K +Q
Sbjct: 165 VAQVSATQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQ 220
Score = 29.9 bits (64), Expect = 1.7
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVIQVACGA 433
IA G H+L I+ + +S G G L + G+ F ++ V QV+
Sbjct: 116 IATGKYHTLLINN-SKVYSCGVSLSGVLAH--GSETTQCVAFTPIEFPFPAQVAQVSATQ 172
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKC-HLQHISSLIGVPIALITCGNNHTFVL 610
HS + SG + + G NS CG L +R + + +L G P + G + T L
Sbjct: 173 NHSAFVLQSGQVLTCGDNSSHCCG-HLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFL 231
Query: 611 SKSRCGFWMG 640
S+ + G
Sbjct: 232 SREGHAYTCG 241
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 413 IQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGN 592
+Q+A G YH++ + NS +YS G + G T+ I +A ++
Sbjct: 114 MQIATGKYHTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQ 172
Query: 593 NHT-FVLSKSR 622
NH+ FVL +
Sbjct: 173 NHSAFVLQSGQ 183
>At3g15430.1 68416.m01957 regulator of chromosome condensation
(RCC1) family protein low similarity to UVB-resistance
protein UVR8 [Arabidopsis thaliana] GI:5478530; contains
Pfam profile PF00415: Regulator of chromosome
condensation (RCC1)
Length = 488
Score = 47.6 bits (108), Expect = 8e-06
Identities = 36/128 (28%), Positives = 61/128 (47%), Gaps = 3/128 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKN-VIQVACGAY 436
+A GL ++ + G ++ GS++ GQLG+ + PK V+ L T V+Q+A G
Sbjct: 221 VAAGLHFTVFLSREGHAYTCGSNTHGQLGHG-DTLDRPVPKVVEFLKTIGPVVQIAAGPS 279
Query: 437 HSVALTNSGDLYSWGANSYGQCGL-ELYQTRKCHLQHISSLIGVPIALITCGNNHTFVL- 610
+ +A+T G +YS+G+ S G E + + G+ I ++ G+ H L
Sbjct: 280 YVLAVTQDGSVYSFGSGSNFCLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALD 339
Query: 611 SKSRCGFW 634
S R W
Sbjct: 340 SNGRVYTW 347
Score = 46.4 bits (105), Expect = 2e-05
Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 7/134 (5%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDK--PKFVKGLATK--NVIQVAC 427
IA G + LA+ + G +S+GS S LG+ QD+ P+ ++ K ++++V+
Sbjct: 274 IAAGPSYVLAVTQDGSVYSFGSGSNFCLGHG---EQQDELQPRVIQAFKRKGIHILRVSA 330
Query: 428 GAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGNNHTFV 607
G H+VAL ++G +Y+WG G G + K Q + +L + TFV
Sbjct: 331 GDEHAVALDSNGRVYTWGKGYCGALG-HGDENDKITPQVLVNLNNCLAVQVCARKRKTFV 389
Query: 608 LSKSRC--GF-WMG 640
L + GF WMG
Sbjct: 390 LVEGGLLYGFGWMG 403
Score = 42.7 bits (96), Expect = 2e-04
Identities = 23/64 (35%), Positives = 34/64 (53%)
Frame = +3
Query: 51 VIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALV 230
+ +P L + + + VAAG +++LS GH Y+CG+N GQLG D P +V
Sbjct: 204 IFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYTCGSNTHGQLGHGDTLDR-PVPKVV 262
Query: 231 ETFK 242
E K
Sbjct: 263 EFLK 266
Score = 41.5 bits (93), Expect = 5e-04
Identities = 24/76 (31%), Positives = 39/76 (51%)
Frame = +2
Query: 278 HSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVACGAYHSVALTN 457
HS + + GQ + G +S G+ + +PK V+ L QVA G + +V L+
Sbjct: 174 HSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSR 233
Query: 458 SGDLYSWGANSYGQCG 505
G Y+ G+N++GQ G
Sbjct: 234 EGHAYTCGSNTHGQLG 249
Score = 41.5 bits (93), Expect = 5e-04
Identities = 22/87 (25%), Positives = 41/87 (47%)
Frame = +2
Query: 245 LHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLATKNVIQVA 424
+H ++ G +H++A+D G+ ++WG G LG+ + + P+ + L +QV
Sbjct: 323 IHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHG-DENDKITPQVLVNLNNCLAVQVC 381
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQCG 505
+ L G LY +G +G G
Sbjct: 382 ARKRKTFVLVEGGLLYGFGWMGFGSLG 408
Score = 35.5 bits (78), Expect = 0.033
Identities = 17/53 (32%), Positives = 29/53 (54%)
Frame = +3
Query: 90 HIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDC 248
HI V+AG+ H++ L ++G +Y+ G G LG E+D P ++ +C
Sbjct: 324 HILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGDENDK-ITPQVLVNLNNC 375
Score = 35.5 bits (78), Expect = 0.033
Identities = 12/53 (22%), Positives = 31/53 (58%)
Frame = +3
Query: 39 ITDLVIKPTLSKWKESDHIQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQT 197
++D V++P + + + + V+ G +H++ ++ G ++ G+N+ QLG +
Sbjct: 414 VSDKVLRPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDS 466
Score = 35.5 bits (78), Expect = 0.033
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = +2
Query: 374 KPKFVKGLATKNVIQVACGAYHSVALTNSGDLYSWGANSYGQCG 505
+P+ ++ L V QV+ G YH++ +T G ++ +G N Q G
Sbjct: 420 RPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLG 463
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 93 IQAVAAGEFHSLYLSNSGHLYSCGNNDVGQLGRQTESDNGKNPALVETFKDCTIRQ 260
+ V+A + HS ++ SG + +CG+N G S P LVE K +Q
Sbjct: 165 VAQVSATQNHSAFVLQSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQ 220
Score = 29.9 bits (64), Expect = 1.7
Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 3/130 (2%)
Frame = +2
Query: 260 IACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKF--VKGLATKNVIQVACGA 433
IA G H+L I+ + +S G G L + G+ F ++ V QV+
Sbjct: 116 IATGKYHTLLINN-SKVYSCGVSLSGVLAH--GSETTQCVAFTPIEFPFPAQVAQVSATQ 172
Query: 434 YHSVALTNSGDLYSWGANSYGQCGLELYQTRKC-HLQHISSLIGVPIALITCGNNHTFVL 610
HS + SG + + G NS CG L +R + + +L G P + G + T L
Sbjct: 173 NHSAFVLQSGQVLTCGDNSSHCCG-HLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFL 231
Query: 611 SKSRCGFWMG 640
S+ + G
Sbjct: 232 SREGHAYTCG 241
Score = 27.5 bits (58), Expect = 8.9
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
Frame = +2
Query: 413 IQVACGAYHSVALTNSGDLYSWGANSYGQCGLELYQTRKCHLQHISSLIGVPIALITCGN 592
+Q+A G YH++ + NS +YS G + G T+ I +A ++
Sbjct: 114 MQIATGKYHTLLINNS-KVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQ 172
Query: 593 NHT-FVLSKSR 622
NH+ FVL +
Sbjct: 173 NHSAFVLQSGQ 183
>At3g55950.1 68416.m06217 protein kinase family protein contains
protein kinase domain, Pfam:PF00069; similar to
cytokinin-regulated kinase 1 [Nicotiana tabacum]
gi|10998537|gb|AAG25966
Length = 814
Score = 31.9 bits (69), Expect = 0.41
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 102 VAAGEFHSLYLSNSGHLYSCGNNDVGQL 185
++AG+ H+ L+ +G+L GNND GQL
Sbjct: 204 ISAGKSHACGLNTTGNLICIGNNDSGQL 231
>At3g18750.1 68416.m02380 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 567
Score = 31.5 bits (68), Expect = 0.54
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 518 DIVLDHIVHNYLHPMSRDHHCLLMPQ 441
D+ +DH++H+ L+ SR HH PQ
Sbjct: 441 DVTVDHLIHSQLNQNSRSHHNEAKPQ 466
>At4g34090.2 68417.m04836 expressed protein
Length = 302
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 45 DLVIKPTLSKWKESDHIQAVAAGEFHSL--YLSNSGHLYSCGNNDVGQLGRQTESDNGKN 218
DL+ + L + E DH+ A+ GEF++ G + N + ++GR E+ +
Sbjct: 173 DLLERKVLRHFDEGDHVSAMVTGEFYTKKDLFPGFGRPFVYYANILQKVGRNVEAKDAAR 232
Query: 219 PAL 227
AL
Sbjct: 233 VAL 235
>At4g34090.1 68417.m04837 expressed protein
Length = 330
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 45 DLVIKPTLSKWKESDHIQAVAAGEFHSL--YLSNSGHLYSCGNNDVGQLGRQTESDNGKN 218
DL+ + L + E DH+ A+ GEF++ G + N + ++GR E+ +
Sbjct: 173 DLLERKVLRHFDEGDHVSAMVTGEFYTKKDLFPGFGRPFVYYANILQKVGRNVEAKDAAR 232
Query: 219 PAL 227
AL
Sbjct: 233 VAL 235
>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
ligase SCF complex F-box subunit; identical to F-box
containing protein ORE9 GI:15420162 from [Arabidopsis
thaliana]
Length = 693
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 425 CGAYHSVALTNSGDLYSWGANSYGQ--CGLELYQTRKC 532
CG S+++ NSGDL G + G+ C L ++ + C
Sbjct: 346 CGGLQSLSIKNSGDLTDMGLVAIGRGCCKLTTFEIQGC 383
>At2g34890.1 68415.m04283 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 597
Score = 28.7 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 672 LKTQLSHECFYPIQKPHLDFDSTNVWLLPHVIK 574
+K +LS C+ PIQ D N+W +P ++K
Sbjct: 226 VKAKLSRFCYVPIQNIFSLCDVPNIWHIPLLLK 258
>At5g54140.1 68418.m06740 IAA-amino acid hydrolase, putative (ILL3)
identical to IAA-amino acid hydrolase homolog ILL3
[Arabidopsis thaliana] gi|3420801|gb|AAC31939
Length = 428
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 207 CQIQFDVLTDPHHYYHMNINDHCLRGISYGIRQLLL 100
C+ D+ D H Y +NDH L + + +LLL
Sbjct: 311 CKADIDMHEDDHPMYPATVNDHKLHEFTEKVLKLLL 346
>At4g22290.1 68417.m03224 ubiquitin carboxyl-terminal hydrolase
family protein similar to pVHL-interacting
deubiquitinating enzyme 1 type II [Homo sapiens]
GI:18698435; contains Pfam profile PF00443: Ubiquitin
carboxyl-terminal hydrolase
Length = 974
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +2
Query: 224 FSGNI*RLHNTTIACGLQHSLAIDEWGQPFSWGSDSMGQLGNNLGAHAQDKPKFVKGLAT 403
FSG + +L T GL S ++ G P GS GQL + L A KPK+ + +
Sbjct: 111 FSGPLSQLQPT----GLITSGSLGSSG-PILSGSRRSGQLDHQLSNLASSKPKYGSSVTS 165
Query: 404 KNVIQVACG 430
NV V G
Sbjct: 166 LNVDPVRVG 174
>At3g11964.1 68416.m01479 S1 RNA-binding domain-containing protein
similar to SP|Q05022 rRNA biogenesis protein RRP5
{Saccharomyces cerevisiae}; contains Pfam profile
PF00575: S1 RNA binding domain
Length = 1838
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -2
Query: 394 PFDKFRFVLSMSAKVIAKLPHT 329
PF KFR S+SA+V+AK HT
Sbjct: 1013 PFAKFRVGQSISARVVAKPCHT 1034
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,215,876
Number of Sequences: 28952
Number of extensions: 348093
Number of successful extensions: 1211
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -