Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060990.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1318 - 29282562-29282566,29282727-29282810,29282913-292833...    29   3.5  
04_04_0233 + 23801944-23802598,23802914-23803047,23803548-238037...    29   3.5  
08_02_0182 - 13930436-13931245,13931348-13931627,13931788-139323...    29   4.6  

>06_03_1318 - 29282562-29282566,29282727-29282810,29282913-29283380,
            29283735-29283917,29284362-29284467,29284627-29284651,
            29284736-29284855,29284920-29284997,29285646-29285774,
            29285976-29285989,29286168-29287944,29288344-29288489,
            29288921-29291029
          Length = 1747

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 22/77 (28%), Positives = 33/77 (42%)
 Frame = +3

Query: 420  SKRRHQRKTWKKLCIDCGRHQ**IS*RKTPISGREAMVDFENGKSSPNDTDVKVESDSSD 599
            S  RH  K W  L   C  H       +  +  R A +  + G+  P  T ++V +  +D
Sbjct: 1264 SPLRHYTKAWSSLLQSCKAH------GENVLGKRAANMLIDVGRKDP-ATTLQVSNFFND 1316

Query: 600  LGDCVTFVTDKRRKNVK 650
            +GD  T +  K   NVK
Sbjct: 1317 IGDRETALRIKEMTNVK 1333


>04_04_0233 +
           23801944-23802598,23802914-23803047,23803548-23803730,
           23804145-23804318
          Length = 381

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 384 NVIKCHQY*NKFSKRRHQRKTWKKLCIDCG 473
           N+  C+ Y   FS+ + + K W +L  DCG
Sbjct: 281 NISLCYNYGEGFSQDQVRSKRWLQLAADCG 310


>08_02_0182 -
           13930436-13931245,13931348-13931627,13931788-13932324,
           13932482-13932579,13932678-13933118
          Length = 721

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
 Frame = +2

Query: 152 CLSQNVNFVNLNRCKHIEFLNYFFKYKTEFQN--TLDVLIVTRS*GR 286
           CL+  V  + L+ C  + F+N FF Y+T   +  T+ V I+T   GR
Sbjct: 27  CLTFRVWVLGLSSCVFLAFVNEFFMYRTTQLSIGTVVVQIITLPIGR 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,250
Number of Sequences: 37544
Number of extensions: 306328
Number of successful extensions: 737
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)