Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060990.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44228| Best HMM Match : LMP (HMM E-Value=0.11)                      31   1.2  
SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)               31   1.2  
SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)                 29   2.7  
SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)                   29   4.7  
SB_46684| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  
SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_44228| Best HMM Match : LMP (HMM E-Value=0.11)
          Length = 276

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 265 CHEILRKIELFKSQVEESMQILNKQIFHTNENKIK 369
           C ++ +KIE   S+ EE++Q L KQ+   N+  +K
Sbjct: 217 CAKLSQKIESLSSEQEEAIQDLEKQLKKANKESVK 251


>SB_10467| Best HMM Match : zf-PARP (HMM E-Value=5.6e-35)
          Length = 1311

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/86 (23%), Positives = 40/86 (46%)
 Frame = +1

Query: 307 VEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFLSEDTSVKPGKNFVLIVEDTNN 486
           V+  +  +NK++++    ++ K  +    +V+    NF +     KP K   L ++  ++
Sbjct: 228 VKMLLPAINKRVYNLQSKQLVKLFS-QGGDVSETISNFFTNSIICKPAKKSNLTLQQKSS 286

Query: 487 EFLEEKHLFRDEKRWWILKMVNHHRT 564
           + L    +   EKR  I+  V  HRT
Sbjct: 287 KSLTRIKVKNIEKRIEIMAEVESHRT 312


>SB_25257| Best HMM Match : Pkinase (HMM E-Value=4e-10)
          Length = 892

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 394 LMTLSYYISLFYFRLYEISVYSIFACFPPLV 302
           +  LS+Y+  F  +LY IS   IF  F PLV
Sbjct: 226 IQLLSHYLHAFLCQLYSISGQEIFLQFSPLV 256


>SB_33275| Best HMM Match : PDZ (HMM E-Value=5.2e-11)
          Length = 881

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +1

Query: 364 IKKCNNLTSSNVTSIEINFLSEDTSVKPGKNFVLIVEDTNNEFLEEKHLFRDEKR 528
           I++  + T+  VTSI  + ++ D  +K   N  + ++  ++    E+H F +  R
Sbjct: 407 IRRSLSSTTDGVTSISEDDIASDEELKASFNENVFIDSPSDSVFSEQHFFDNNSR 461


>SB_46684| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 256

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = -2

Query: 616 VTQSPKSELSLSTFTSVSFGDDLPFSKSTIASRPEIGVFLQEI 488
           + ++P  +  LS   S +     P  + TI +RP +  F QEI
Sbjct: 122 IRETPLVDRYLSDHASAAVNKHAPLKQRTIVTRPRVPWFTQEI 164


>SB_38937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2085

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/92 (23%), Positives = 40/92 (43%)
 Frame = +1

Query: 268 HEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFLSEDTSVKP 447
           H I  +++  K     S+ +  K ++      ++   +     +T +EI+ ++ED     
Sbjct: 39  HAIAEQVKHAKPGFPRSLTLGQKLLYAVPATPVESTASEIPPLLTQLEIH-VAED----- 92

Query: 448 GKNFVLIVEDTNNEFLEEKHLFRDEKRWWILK 543
            K+F   V D   E +   H F  E RWW+ K
Sbjct: 93  -KSFTTRVRDIFKETVVS-HKFAKESRWWLSK 122


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,728,110
Number of Sequences: 59808
Number of extensions: 392638
Number of successful extensions: 1004
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1003
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)