Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060990.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical pr...    32   0.33 
AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical...    30   1.3  
AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical ...    29   3.1  
U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   7.2  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   7.2  
Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen prot...    27   9.5  

>Z72511-2|CAA96656.1|  413|Caenorhabditis elegans Hypothetical
           protein F55A11.2 protein.
          Length = 413

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
 Frame = +1

Query: 238 ISKYIRCTYCHEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEIN 417
           +++Y +   C+E   +I+   S V+  +  LNKQI    E   ++  N+ + N   I++ 
Sbjct: 168 LAEYAKKKSCYEERSQIDHLSSIVKSDITGLNKQIGQLQEFSKRRAGNMKNQNSGHIQLV 227

Query: 418 FLS-EDTSVKPGKNFVLIVEDTNNEFLEEKH 507
            +  +      GK++  ++E +      EK+
Sbjct: 228 VVGLQSKLANVGKDYQSVLEISTETMKAEKN 258


>AF016452-17|AAB66021.1| 1152|Caenorhabditis elegans Hypothetical
           protein T05H4.3 protein.
          Length = 1152

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = +1

Query: 265 CHEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEIN 417
           C + + +I L KSQ+EE  QI   ++   ++N++     ++S N+T + +N
Sbjct: 837 CDQKIEQIILEKSQMEELSQI---RLIDLSKNRLSSVREISSFNITHLILN 884


>AL031624-3|CAA20939.1|  416|Caenorhabditis elegans Hypothetical
           protein H16D19.4 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 6/40 (15%)
 Frame = -2

Query: 511 IGVFLQEIHYWCLPQSIQSF------FQVLRWCLRLENLF 410
           IGV ++EI  WC+ QS+         F+ +  C+ L N F
Sbjct: 327 IGVIVEEISLWCIDQSLHEINKCLYRFKPMGVCVMLSNFF 366


>U64833-3|AAB04816.2|  211|Caenorhabditis elegans Hypothetical
           protein B0507.4 protein.
          Length = 211

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 280 RKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFL 423
           +  + FKS  EE M  +N +IF+ NE      NN  S+   + EI ++
Sbjct: 64  KNFKYFKSVSEEMMPEINSEIFNLNEEITILLNNF-STIFNNFEIMYI 110


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 ILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTS 390
           +LR  E F  Q   ++ +  KQI    EN +   NN+TS
Sbjct: 512 VLRTSEQFTYQPHANIDLYRKQILSIYENCLSVLNNVTS 550


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 ILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTS 390
           +LR  E F  Q   ++ +  KQI    EN +   NN+TS
Sbjct: 512 VLRTSEQFTYQPHANIDLYRKQILSIYENCLSVLNNVTS 550


>Z35604-5|CAA84680.2|  269|Caenorhabditis elegans Hypothetical
           protein ZK1058.5 protein.
          Length = 269

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 682 PLTAHIPPDSIFTFFLLLSVTKVTQSPKSELSLSTFTSV 566
           PL A IP   +F F    +  K+ +    EL LS  TSV
Sbjct: 96  PLVAEIPNLKLFAFDFSDNAVKLLEERAKELELSVATSV 134


>AF040660-2|AAC71147.1|  302|Caenorhabditis elegans Collagen protein
           88 protein.
          Length = 302

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 522 EAMVDFENGKSSPNDTDVKVESDSSDLGDCVT 617
           +A +D ENG++ PN  D   +  S    +C+T
Sbjct: 107 DAGLDGENGQAGPNGQDGAGQGSSQQPSECIT 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,372,517
Number of Sequences: 27780
Number of extensions: 325643
Number of successful extensions: 980
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)