Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060990.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.68 
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   3.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   4.8  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -1

Query: 464 NTKFFPGFTLVSSLRKFISILVTFDDVKLLHFFILFSFV*NIC 336
           N K+ PG  L  ++     ++    D  +L F +   F+  IC
Sbjct: 61  NVKYLPGHKLPPNIIAIPDVVEAAKDADILTFVVPHQFIKRIC 103


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 397 VTSIEINFLSEDTSVKPGKNFVLIVEDTNNEFL 495
           VTSIE N    +T V        + E ++NE L
Sbjct: 84  VTSIEGNTFKTETQVNDSLKVTRLYEFSDNELL 116


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +2

Query: 71  FIALNPPQYISETDTSNLMPEGDFC 145
           F+A N  QY  + +    +P G +C
Sbjct: 422 FVAFNGDQYDLKKNLKVCLPPGQYC 446


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,311
Number of Sequences: 438
Number of extensions: 4039
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)