Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060990.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03790.1 68418.m00346 homeobox-leucine zipper family protein ...    31   0.72 
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui...    31   0.95 
At5g53740.1 68418.m06678 hypothetical protein                          30   1.3  
At4g30935.1 68417.m04392 WRKY family transcription factor contai...    29   2.2  
At5g64410.1 68418.m08091 oligopeptide transporter OPT family pro...    29   3.8  
At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR...    28   5.0  
At1g51240.1 68414.m05763 hypothetical protein similar to hypothe...    28   5.0  
At5g52000.1 68418.m06453 importin alpha-1 subunit, putative simi...    28   6.7  

>At5g03790.1 68418.m00346 homeobox-leucine zipper family protein
           similar to homeobox-leucine zipper protein Athb-7
           (SP:P46897) [Arabidopsis thaliana]; contains Pfam
           PF00046: Homeobox domain
          Length = 236

 Score = 31.1 bits (67), Expect = 0.72
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +1

Query: 307 VEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFLSE 429
           V ES +I+N   F  N N++ K   LTS  + S+E +F  E
Sbjct: 57  VPESEKIMNAYRFPNNNNEMIKKKRLTSGQLASLERSFQEE 97


>At5g02880.1 68418.m00231 HECT-domain-containing protein /
            ubiquitin-transferase family protein /
            armadillo/beta-catenin-like repeat-containing protein
            similar to SP|Q14669 Thyroid receptor interacting protein
            12 (TRIP12) {Homo sapiens}; contains Pfam profiles
            PF00632: HECT-domain (ubiquitin-transferase), PF00514:
            Armadillo/beta-catenin-like repeat
          Length = 1502

 Score = 30.7 bits (66), Expect = 0.95
 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +1

Query: 238  ISKYIRCTYCHEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCN--NLTSSNVTSIE 411
            I   +  T C+ I +++E F+S   +   I + +IF+  E +   C   +L S N     
Sbjct: 1335 IKGIVNATVCNGIQKQVEAFRSGFNQVFSIEHLRIFNEEELETMLCGECDLFSMNEVLDH 1394

Query: 412  INFLSEDTSVKPGKNFVL 465
            I F    TS  P   ++L
Sbjct: 1395 IKFDHGYTSSSPPVEYLL 1412


>At5g53740.1 68418.m06678 hypothetical protein 
          Length = 275

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +1

Query: 283 KIELFKSQVEESMQILNKQIFHTNENKIKKC 375
           KIE+FKS  + ++ +  + + HTNE+  K C
Sbjct: 173 KIEIFKSVFKWNVLLSTQPLLHTNESNYKTC 203


>At4g30935.1 68417.m04392 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain
          Length = 466

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
 Frame = +1

Query: 247 YIRCTYCHEILRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTSSNVTSIEINFLS 426
           Y RCTY     +KIE   +     ++I+NK + HT+E   K   +     VT+  I  +S
Sbjct: 190 YYRCTYTECCAKKIEC-SNDSGNVVEIVNKGL-HTHEPPRKTSFSPREIRVTT-AIRPVS 246

Query: 427 EDTSVKPGKNFVLIVED---TNNEFLEEKHLFRDEKR 528
           ED +V    + V    D   +  E++ E     D KR
Sbjct: 247 EDDTVVEELSIVPSGSDPSASTKEYICESQTLVDRKR 283


>At5g64410.1 68418.m08091 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe};
           contains Pfam profile PF03169: OPT oligopeptide
           transporter protein
          Length = 729

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 173 FVNLNRCKHIEFLNYFFKYKTE 238
           F+ L  C  + FLN FF Y+TE
Sbjct: 39  FLGLISCSLLSFLNQFFSYRTE 60


>At4g36150.1 68417.m05145 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1179

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 277 LRKIELFKSQVEESMQILNKQIFHTNENKIKKCNNLTS 390
           LR++ L ++ +  ++QI   Q++H     +K C NLTS
Sbjct: 855 LRRLCLSRNNMISNLQIDINQLYHLKWLDLKYCKNLTS 892


>At1g51240.1 68414.m05763 hypothetical protein similar to
           hypothetical protein GB:AAD30637
          Length = 127

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +2

Query: 53  TNKMTHFIALNPPQYISETDTSNLMPEGDFCVCCLS 160
           T  M H +    P YI E + +N +P G+   C LS
Sbjct: 38  TPSMFHTLKYKDPFYIIEFEDNNQLPHGERWYCLLS 73


>At5g52000.1 68418.m06453 importin alpha-1 subunit, putative similar
           to importin alpha-1 subunit (Karyopherin alpha-1
           subunit, KAP alpha) [Arabidopsis thaliana]
           SWISS-PROT:Q96321
          Length = 441

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +1

Query: 316 SMQILNKQIFHTNENKIKKCNNLTSSNVTS 405
           ++ I++  +   +ENKIKKC     SN+T+
Sbjct: 255 ALPIISNMLTRNHENKIKKCACWVISNITA 284


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,731
Number of Sequences: 28952
Number of extensions: 284782
Number of successful extensions: 819
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)