Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060989.seq
         (676 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    24   1.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   4.7  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.1  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   8.1  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +1

Query: 343 KGIVKVGALDADEHRSVSQKYGVT 414
           KGI+K   L+  EHRS S K G+T
Sbjct: 587 KGIMKTYWLEKREHRSSSTK-GIT 609


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +3

Query: 393 ITEIWSHW-LPHN*DIHREQAHTISRSEDSRRIC*SCFKG 509
           ++ ++SH+   +N ++ RE+    + +ED   +C  C  G
Sbjct: 238 VSIMFSHYDRNNNGNLEREELEQFAENEDLEELCRGCNLG 277



 Score = 21.8 bits (44), Expect = 6.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -3

Query: 311 TRLLQCPHHGAKNSMIQ 261
           +RL++C HH  +N+ I+
Sbjct: 145 SRLMRCLHHDIENAHIR 161


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 458 GVCLLPVNILIVGKPVTPYFCDTLLCSSAS 369
           G  LL + +L    P+   FC  L CS+A+
Sbjct: 134 GWLLLMLYLLFATLPLRLSFCVVLACSTAT 163


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 330 CESSKGHCKSRCL 368
           C++  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +3

Query: 330 CESSKGHCKSRCL 368
           C++  GHC   CL
Sbjct: 36  CQAVNGHCSHLCL 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,507
Number of Sequences: 438
Number of extensions: 4405
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)