Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060987.seq
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    27   0.14 
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   3.9  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.9  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     21   6.7  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   6.7  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +2

Query: 419 PSRQPPTAESGLGGSVAATGVPALRSG*RTIIEKIP 526
           P    P+  SGLGG ++   +PAL  G    +E +P
Sbjct: 76  PYAPHPSLSSGLGGGLSGMPMPALGFGLGHPLESVP 111


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 418 TVASTSDSGERPWRQRCC 471
           T    + SGERP+R R C
Sbjct: 66  TTHMRTHSGERPYRCRLC 83


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 418 TVASTSDSGERPWRQRCC 471
           T    + SGERP+R R C
Sbjct: 322 TTHMRTHSGERPYRCRLC 339


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
 Frame = -3

Query: 354 HPDRTYEYH---HHGHAEFGRQHVQYPMIQHWFG 262
           HP  T+ YH   H+    F   H  +      FG
Sbjct: 158 HPGMTFRYHFNVHNSGTHFWHSHSGFQRSDGTFG 191


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 142 HPAPSHSSLNTPTL 101
           HPA +HS+L +P +
Sbjct: 121 HPAAAHSALLSPAM 134


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,217
Number of Sequences: 336
Number of extensions: 2878
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)