Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060987.seq
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)               128   4e-30
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     33   0.15 
SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.27 
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   31   0.62 
SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)            29   3.3  
SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)                  29   3.3  
SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)              29   4.4  
SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)               28   5.8  
SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)                     28   5.8  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_8252| Best HMM Match : rve (HMM E-Value=0.13)                       28   5.8  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 28   7.7  
SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)           28   7.7  
SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_19071| Best HMM Match : Ribosomal_L4 (HMM E-Value=0)
          Length = 299

 Score =  128 bits (309), Expect = 4e-30
 Identities = 58/94 (61%), Positives = 63/94 (67%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTK WR+WH     
Sbjct: 55  AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKTWRKWHTKVNV 114

Query: 435 XXXXXXXXXXXXXPASQRXVQARGQLLKRFPSFP 536
                         A    + ARG  +++    P
Sbjct: 115 QQRRFAVCSALAASALPALIMARGHRIEKIAEVP 148



 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 30/54 (55%), Positives = 40/54 (74%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVSK 252
           ARP+++V++E  E+       LP VFKAPIRPDLVN VH +++KN RQPY V+K
Sbjct: 2   ARPVITVFNENGESA--GQTTLPAVFKAPIRPDLVNFVHSNIAKNKRQPYAVNK 53



 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 24/65 (36%), Positives = 39/65 (60%)
 Frame = +2

Query: 461 SVAATGVPALRSG*RTIIEKIPELPLVVADKVQXINKXKQAVIFLRRLXAXTDILKVYKS 640
           ++AA+ +PAL       IEKI E+PLV++D ++ + K   AV  L+ + A  D+ K   S
Sbjct: 124 ALAASALPALIMARGHRIEKIAEVPLVISDAIESVTKTSAAVKLLKAVNAYEDVEKCIDS 183

Query: 641 *RLRA 655
            ++RA
Sbjct: 184 KKIRA 188


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWF 265
           HH  CY  H    Y Y+ H H  + R H  YP  +H++
Sbjct: 20  HHYCCYCHH---RYCYYRHHHYCWYRHHYHYPCYRHYY 54


>SB_35460| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -3

Query: 363 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQHWFGDQ 256
           Y +HP  T+ YHH  H +   ++ Q+P + H +  Q
Sbjct: 413 YHQHPQLTHRYHHQ-HPQVIHRYHQHPQVTHRYHQQ 447



 Score = 31.9 bits (69), Expect = 0.47
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -3

Query: 363 YRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 271
           Y +HP  T+ YH H      R H Q+P + H
Sbjct: 232 YHQHPQVTHRYHQHPQVTH-RYHQQHPQVTH 261


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 295
           HH     RH  R + +HHH H E+ R+H
Sbjct: 325 HHQRHRHRHRHR-HRHHHHHHHEYNRRH 351


>SB_49912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 387 TYVHHDTCYRRHPDRTYEYHHHGHA 313
           TY H DT  R+HPD     H   HA
Sbjct: 123 TYTHQDTQMRKHPDTQIYVHAPRHA 147


>SB_25030| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
 Frame = -3

Query: 342 TYEYHHHGHAEFGRQHVQYPMI-QHWFGDQLLAHAVGLP-RVLGHRNVN 202
           +Y++HHHG  E   Q V    I + W   +L +H    P RV+G   ++
Sbjct: 21  SYQWHHHGTGETDDQPVTTTRITRTWVNRRLNSHRTIKPSRVIGRAQIH 69


>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
          Length = 694

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 9/35 (25%), Positives = 14/35 (40%)
 Frame = -3

Query: 390 RTYVHHDTCYRRHPDRTYEYHHHGHAEFGRQHVQY 286
           R + HH   +  H    + +HHH H      H  +
Sbjct: 209 RHHQHHQHHHHHHHQHNHHHHHHNHHHHHHHHYHH 243


>SB_37045| Best HMM Match : Drf_FH1 (HMM E-Value=0.95)
          Length = 1080

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 267  TSAESWGTGRAVARIPR-VRGGGTHRSGQGAFGNMCRGGR 383
            T +E   +G ++ R PR  RGGG    G G  G   RGGR
Sbjct: 983  TPSEPSSSGSSIVRRPRRRRGGGGGGGGGGGGGGGRRGGR 1022


>SB_29069| Best HMM Match : Furin-like (HMM E-Value=0.042)
          Length = 628

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/54 (33%), Positives = 21/54 (38%)
 Frame = +3

Query: 252 GAGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G   Q     WG G+    + R  GGG  R   G +G M  GG    P   W R
Sbjct: 14  GGWGQGPGGGWGRGQG-GGMGRGPGGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 66


>SB_53717| Best HMM Match : Furin-like (HMM E-Value=0.05)
          Length = 1098

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/43 (39%), Positives = 19/43 (44%)
 Frame = +3

Query: 285 GTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRR 413
           G GR + R P   GGG  R   G +G M  GG    P   W R
Sbjct: 271 GQGRGMGRGP---GGGWGRGSGGGWGRMQGGGMGRGPGGGWGR 310


>SB_20534| Best HMM Match : DUF21 (HMM E-Value=9.8)
          Length = 193

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHH 322
           HH   YR H  + Y +HHH
Sbjct: 96  HHHQHYRHHRHQHYRHHHH 114


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 158  GRGLAAPCTVSLFSEYTDTKGRATDRLI 75
            G+GL   C+V+L S Y  T+G+   RL+
Sbjct: 3163 GKGLTTWCSVNLDSVYLSTEGKEVYRLV 3190


>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
          Length = 264

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 384 YVHHDTCYRRHPDRTYEYHHHGH 316
           Y HH   +RR   R + +HHH H
Sbjct: 233 YHHHHHHHRRRRRRRHHHHHHHH 255


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHH 322
           HH   + RH  R + YHHH
Sbjct: 570 HHHLHHHRHHHRHHHYHHH 588


>SB_10758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 845

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
 Frame = +1

Query: 67  SSEMSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPY-- 240
           S +M L   R  +  Y+E    ++   + LP V  AP+  D+V +V  S  K S + Y  
Sbjct: 475 SPQMPLDFPRSFLEDYAEACANLK---QSLPQVHLAPLASDIVREVESSEVKLSLKFYVS 531

Query: 241 --CVSKELVTK 267
             C S E V K
Sbjct: 532 ENCPSVEAVVK 542


>SB_9657| Best HMM Match : P_proprotein (HMM E-Value=7.5e-29)
          Length = 1779

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGH 316
           HH   + RH DR + + HH H
Sbjct: 340 HHRNKHYRHHDRNHHHRHHHH 360


>SB_44956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 736

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -3

Query: 366 CYRRHPDRTYEYHHHGHAEFGRQHVQYPMIQH 271
           CY +  +  + YHHH H      H Q+    H
Sbjct: 246 CYHKLKNPRHRYHHHHHHHHQHNHHQHHHHHH 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,121,105
Number of Sequences: 59808
Number of extensions: 386076
Number of successful extensions: 1180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)