Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060987.seq
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal pro...   113   1e-25
Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical ...    29   2.9  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical...    27   8.9  

>AF000196-2|AAC24253.1|  345|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 4 protein.
          Length = 345

 Score =  113 bits (272), Expect = 1e-25
 Identities = 54/94 (57%), Positives = 59/94 (62%)
 Frame = +3

Query: 255 AGHQTSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGRMFAPTKPWRRWHXXXXX 434
           AG Q SAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGG MFAP K +RRWH     
Sbjct: 57  AGKQHSAESWGTGRAVARIPRVRGGGTHRSGQGAFGNMCRGGHMFAPLKVFRRWHRNVNI 116

Query: 435 XXXXXXXXXXXXXPASQRXVQARGQLLKRFPSFP 536
                              +QARG ++ +    P
Sbjct: 117 AQKRYAVSSAIAASGIPALLQARGHVIDQVAEVP 150



 Score = 65.7 bits (153), Expect = 3e-11
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +2

Query: 452 LGGSVAATGVPALRSG*RTIIEKIPELPLVVADKVQXINKXKQAVIFLRRLXAXTDILKV 631
           +  ++AA+G+PAL      +I+++ E+PLVV+DKV+   K K+AV+FLRR     DI KV
Sbjct: 123 VSSAIAASGIPALLQARGHVIDQVAEVPLVVSDKVESFRKTKEAVVFLRRSHLWADIEKV 182

Query: 632 YKS*RLRA 655
           Y S R RA
Sbjct: 183 YNSKRNRA 190



 Score = 52.4 bits (120), Expect = 3e-07
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +1

Query: 91  ARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCVS 249
           ARPLV+VY EK E  Q   + LP VF+ PIRPDLV+ +   + +N RQ + V+
Sbjct: 3   ARPLVTVYDEKYEATQSQIR-LPAVFRTPIRPDLVSFIADQVRRNRRQAHAVN 54


>Z78061-1|CAB01494.1|  658|Caenorhabditis elegans Hypothetical
           protein C48G7.1 protein.
          Length = 658

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +1

Query: 175 PIRPDLVNDVHVSMSKNSRQPYCVSKELVTKPVLNHGVLDVLS 303
           P + D ++DVH+S S    Q     K +   P L H     LS
Sbjct: 205 PSKHDRLDDVHISRSDRRSQSVRSHKSVTASPKLGHSTSSTLS 247


>AC087794-4|AAG53704.1|  275|Caenorhabditis elegans Hypothetical
           protein Y32G9A.5 protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 22/69 (31%), Positives = 30/69 (43%)
 Frame = +1

Query: 397 RSPGGVGTVASTSDSGERPWRQRCCYRRPSAXFRLEDNY*KDSRASLGCSRQSPXDQQXQ 576
           R PG     ASTSD+ + P   +  Y + S+  R   NY  ++ AS   + Q P   Q  
Sbjct: 149 RYPGNYNAFASTSDAPQYPGSSQ--YPQGSSAPRYPGNY--NAFASTSDAPQYPGSSQYP 204

Query: 577 TGCHLPEAP 603
            G   P  P
Sbjct: 205 QGSSAPRYP 213



 Score = 28.7 bits (61), Expect = 3.8
 Identities = 22/69 (31%), Positives = 29/69 (42%)
 Frame = +1

Query: 397 RSPGGVGTVASTSDSGERPWRQRCCYRRPSAXFRLEDNY*KDSRASLGCSRQSPXDQQXQ 576
           R PG     ASTSD+ + P   +  Y + S+  R   NY  ++ AS     Q P   Q  
Sbjct: 87  RYPGNYNAFASTSDAPQYPGSSQ--YPQGSSAPRYPGNY--NAFASTSDEPQYPGSSQYP 142

Query: 577 TGCHLPEAP 603
            G   P  P
Sbjct: 143 QGSSAPRYP 151


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 378 HHDTCYRRHPDRTYEYHHHGHAEFGRQH 295
           HHD  +++H  + ++ HHHGH   G  H
Sbjct: 120 HHDGHHKKHGRKEHD-HHHGH-HHGHHH 145


>AL132949-31|CAB61110.3|  297|Caenorhabditis elegans Hypothetical
           protein Y53F4B.36 protein.
          Length = 297

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 17/79 (21%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 76  MSLSVARPLVSVYSEKSETVQGAAKPLPFVFKAPIRPDLVNDVHVSMSKNSRQPYCV-SK 252
           MS++V  P +S        V    + + F++  P    ++ D H+   + +    CV S 
Sbjct: 182 MSMAVTSPYLSKLDRLPIVVSACKRAMCFIYDRPTNSIILLDTHMHFKRRAVSVLCVASF 241

Query: 253 ELVTKPVLNHGVLDVLSPE 309
           E +T  +++  V +++ P+
Sbjct: 242 EEITDFIVS--VTEIVFPK 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,757,235
Number of Sequences: 27780
Number of extensions: 280581
Number of successful extensions: 893
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)