Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060987.seq
         (656 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   1.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   3.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.9  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   7.8  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   7.8  

>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = -3

Query: 567 LIXWTLSATTKGSSGIFSIIVL*PERSAGTPVAATLPPRPLS 442
           ++  T+++   G++ +  +    PE  AGT   A   P P S
Sbjct: 15  VVGGTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPS 56


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 333 YHHHGHAEFGRQHVQY 286
           +HHH H     QH+ Y
Sbjct: 351 HHHHHHQTQSLQHLHY 366


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 345 GQGAFGNMCRGGRMFAP 395
           G G FG++CRG     P
Sbjct: 640 GGGEFGDVCRGKLKLPP 656


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -3

Query: 315 AEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVL 220
           +E+G  +VQY  +Q  F  + +A  +    VL
Sbjct: 287 SEYGANNVQYQGVQDIFNTESIAKIMSKNGVL 318


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 315 AEFGRQHVQYPMIQHWFGDQLLAHAVGLPRVL 220
           ++FG  +VQY   +     Q LA AV    VL
Sbjct: 284 SQFGENNVQYQGSEDILNTQSLAKAVSKNGVL 315


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,839
Number of Sequences: 438
Number of extensions: 3457
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)