Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    28   1.1  
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s...    26   5.9  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    26   5.9  
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc...    26   5.9  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    22   6.8  

>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 338 CFVGYFISSGPCVSLSSW 285
           C   Y+ SSGP +SLS W
Sbjct: 43  CITSYWFSSGPFISLSFW 60


>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
           subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 821

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 241 VSWLPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEII 378
           ++W   AK++L  +   + D    E  K   + +  YN+  GD +I
Sbjct: 316 IAWTQVAKLKLRILSSVVNDNMNQENKKRLIQVVSKYNVH-GDPLI 360


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 395 FSFESMMISSPDLMLYEY 342
           F  ES+MI++PDL  Y Y
Sbjct: 260 FHLESVMIANPDLPAYRY 277


>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
           Taz1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 663

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = -2

Query: 634 PFNYKDKCRVLSEMSLKQNKISLLDVSNLILFSFIKVGNTYF*SSK*PRFVKVGDILNFQ 455
           P   KDK R++    +KQN++  L  S  + +  + VG  Y    K P       +L  +
Sbjct: 599 PTQIKDKARLIKARFMKQNRLQEL-YSKSLNWKNVTVGQAYCELHKIPYIEATPPLLREE 657

Query: 454 FTAY 443
              Y
Sbjct: 658 LVNY 661


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 22.2 bits (45), Expect(2) = 6.8
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -1

Query: 446 LPTLPSVQAVELAD 405
           +PTLP+V+ + L+D
Sbjct: 873 MPTLPNVEPISLSD 886



 Score = 21.4 bits (43), Expect(2) = 6.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 386 ESMMISSPDLMLYEYSC 336
           ES  I  P L LY++SC
Sbjct: 925 ESFYIQFPLLELYKFSC 941


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,604,963
Number of Sequences: 5004
Number of extensions: 49118
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)