Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0501 - 18820554-18821548,18821960-18822182                       29   4.6  
04_04_1265 - 32231511-32231813,32231906-32232024,32232511-322327...    28   6.0  
07_01_0564 - 4183441-4183530,4183683-4183752,4183972-4184063,418...    28   8.0  
01_07_0107 - 41118897-41120036                                         28   8.0  
01_06_1273 + 35896320-35896400,35896548-35896736,35897817-358979...    28   8.0  

>07_03_0501 - 18820554-18821548,18821960-18822182
          Length = 405

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +3

Query: 231 DWSG*LASGCEDAALLRGPRTERYAGSRRDEVPYEAAILVQHQVGG*DHH 380
           D SG +  G +    +  P  E    S+      E AI +QH+ GG D+H
Sbjct: 232 DGSGAVIVGADPVGAVERPLFEMAFASQATVPDSEGAITMQHKKGGMDYH 281


>04_04_1265 -
           32231511-32231813,32231906-32232024,32232511-32232721,
           32232870-32232942,32233329-32233603,32233684-32233831,
           32233906-32234143,32234325-32234457,32234852-32235045,
           32235114-32235218,32235332-32236640
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 105 SSIRWCPWTCGPRSACRSHSRAGTRAKCAPSTFTGLF 215
           SS  W P+   PR  C  +++ G    C   T + LF
Sbjct: 283 SSKVWIPYMKAPRGVCDDYAKCGAFGLCNEDTASTLF 319


>07_01_0564 -
           4183441-4183530,4183683-4183752,4183972-4184063,
           4184141-4184240,4184372-4184478,4184703-4184768,
           4184879-4185013,4185653-4185808,4186113-4186262,
           4186426-4186557,4187604-4187693
          Length = 395

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 473 RYIKFPIYRL-PTLPSVQAVELADIECFSFESMMISSP 363
           RYI   I  L P +  +  V + DIECFS+ +  + SP
Sbjct: 225 RYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESP 262


>01_07_0107 - 41118897-41120036
          Length = 379

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 96  CTASSIRWCPWTCGPRSACRSHSRAGTRAKCAPSTF 203
           C A++++  PW C   +  R     G R  CA S +
Sbjct: 36  CAAAAVQDNPWNCSSSTDGRGSDGGGGRGLCACSAY 71


>01_06_1273 +
           35896320-35896400,35896548-35896736,35897817-35897948,
           35898093-35898242,35898564-35898719,35899462-35899596,
           35899706-35899771,35900016-35900122,35900258-35900357,
           35900436-35900527,35901026-35901095,35901229-35901318
          Length = 455

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -1

Query: 473 RYIKFPIYRL-PTLPSVQAVELADIECFSFESMMISSP 363
           RYI   I  L P +  +  V + DIECFS+ +  + SP
Sbjct: 285 RYIDEGIAELVPGVLFIDEVHMLDIECFSYLNRALESP 322


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,082,987
Number of Sequences: 37544
Number of extensions: 329133
Number of successful extensions: 939
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)