Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   8e-08
SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)                    29   4.7  
SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)              29   4.7  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)                 28   6.2  

>SB_47329| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 432

 Score = 54.4 bits (125), Expect = 8e-08
 Identities = 32/82 (39%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
 Frame = +2

Query: 8   RDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTSEV 187
           R+ AER FIR++M+  + D P RY +LV  HG LD L  VDL P+    +     + S  
Sbjct: 308 REDAERLFIRHHMD--DTDPPQRYRDLVQQHGVLDKLADVDLDPKTVANVIVRYEEQSPF 365

Query: 188 RT-VDVYRTVSDLKTRLERLAG 250
           R  +D+ +TV +LK  L    G
Sbjct: 366 RVDLDLTQTVKELKKYLSNELG 387



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 250 LPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEIIIDSK 390
           +P+ KM L + D       G  EMKY    LY Y +  G+E+++  K
Sbjct: 388 IPSNKMVLLHFDPVA--PFGAVEMKYLNNPLYYYKVYDGNELLVHRK 432


>SB_18560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1937

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +3

Query: 78  TGSWCTCTASSIRWCPWTCGPRSACRSHSRAGTRAKCAPSTFTG 209
           TG   TCT +   +CP  C P + C   +  G    C P  +TG
Sbjct: 736 TGDGKTCTEAEEFYCPQKCHPNAKCVRLAVGGQVCVCLPG-YTG 778


>SB_38979| Best HMM Match : I-set (HMM E-Value=0.11)
          Length = 569

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 313 EEMKYPTKQLYSYNIRSGDEIIIDSKLKHSISANST 420
           E+ KYP K+L+SY IR  D+    S    S++AN T
Sbjct: 230 EDDKYPWKRLFSYPIRPRDK---SSSHIFSVAANGT 262


>SB_11786| Best HMM Match : Complex1_LYR (HMM E-Value=5.6)
          Length = 656

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = +1

Query: 313 EEMKYPTKQLYSYNIRSGDEIIIDSKLKHSISANST 420
           E+ KYP K+L+SY IR  D+    S    S++AN T
Sbjct: 401 EDDKYPWKRLFSYPIRPRDK---SSSHIFSVAANGT 433


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 303  AGSRRDEVPYEAAI-LVQHQVGG*DHHRLETEALYIGQLDRL 425
            AG + D + + AA  L++H +GG DHH +    L   Q  R+
Sbjct: 1316 AGRKSDVLEHNAASHLIRHAIGGNDHHFVAQMLLVPDQYRRM 1357


>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
          Length = 1197

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +2

Query: 119 VSVDLRPEKRVQITFTCGDTSEVRTVDVYRTVSDLKTRLERLAGFRLRRCGSFTW 283
           + + L    RV+      + S+V     YR++ D++ R+E+    R+R  G F W
Sbjct: 284 IGLPLAIHSRVRDKNLVTNLSDVYIGSNYRSILDIERRVEQGVLTRMRETGGFCW 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,660,228
Number of Sequences: 59808
Number of extensions: 369491
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)