Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC120989-1|AAI20990.1|  424|Homo sapiens tubulin folding cofacto...    73   7e-13
BC120988-1|AAI20989.1|  424|Homo sapiens tubulin folding cofacto...    72   2e-12
AY398644-1|AAR27875.1|  424|Homo sapiens tubulin-specific chaper...    72   2e-12

>BC120989-1|AAI20990.1|  424|Homo sapiens tubulin folding cofactor
           E-like protein.
          Length = 424

 Score = 73.3 bits (172), Expect = 7e-13
 Identities = 34/81 (41%), Positives = 53/81 (65%)
 Frame = +2

Query: 2   GTRDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTS 181
           G R+ +ER FIRYY++ P+ + P RY EL+  +GKL+PL  VDLRP+   ++     D  
Sbjct: 295 GEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLAEVDLRPQSSAKVEVHFNDQV 354

Query: 182 EVRTVDVYRTVSDLKTRLERL 244
           E  ++ + RTV++LK +L+ L
Sbjct: 355 EEMSIRLDRTVAELKKQLKTL 375



 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +1

Query: 223 KNKIGAVSWLPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEIIIDSKLK 396
           K ++  +  LP + M L+Y D E     GPEEMKY ++ L+S+ IR GD+I ++SK K
Sbjct: 369 KKQLKTLVQLPTSNMLLYYFDHEA--PFGPEEMKYSSRALHSFGIRDGDKIYVESKTK 424


>BC120988-1|AAI20989.1|  424|Homo sapiens tubulin folding cofactor
           E-like protein.
          Length = 424

 Score = 71.7 bits (168), Expect = 2e-12
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 2   GTRDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTS 181
           G R+ +ER FIRYY++ P+ + P RY EL+  +GKL+PL  VDLRP+   ++     D  
Sbjct: 295 GEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLAEVDLRPQSSAKVEVHFNDQV 354

Query: 182 EVRTVDVYRTVSDLKTRLERL 244
           E  ++ + +TV++LK +L+ L
Sbjct: 355 EEMSIRLDQTVAELKKQLKTL 375



 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +1

Query: 223 KNKIGAVSWLPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEIIIDSKLK 396
           K ++  +  LP + M L+Y D E     GPEEMKY ++ L+S+ IR GD+I ++SK K
Sbjct: 369 KKQLKTLVQLPTSNMLLYYFDHEA--PFGPEEMKYSSRALHSFGIRDGDKIYVESKTK 424


>AY398644-1|AAR27875.1|  424|Homo sapiens tubulin-specific chaperone
           cofactor E-like protein protein.
          Length = 424

 Score = 71.7 bits (168), Expect = 2e-12
 Identities = 33/81 (40%), Positives = 53/81 (65%)
 Frame = +2

Query: 2   GTRDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTS 181
           G R+ +ER FIRYY++ P+ + P RY EL+  +GKL+PL  VDLRP+   ++     D  
Sbjct: 295 GEREDSERFFIRYYVDVPQEEVPFRYHELITKYGKLEPLTEVDLRPQSSAKVEVHFNDQV 354

Query: 182 EVRTVDVYRTVSDLKTRLERL 244
           E  ++ + +TV++LK +L+ L
Sbjct: 355 EEMSIRLDQTVAELKKQLKTL 375



 Score = 52.8 bits (121), Expect = 1e-06
 Identities = 25/58 (43%), Positives = 37/58 (63%)
 Frame = +1

Query: 223 KNKIGAVSWLPAAKMRLFYVDQELRDTQGPEEMKYPTKQLYSYNIRSGDEIIIDSKLK 396
           K ++  +  LP + M L+Y D E     GPEEMKY ++ L+S+ IR GD+I ++SK K
Sbjct: 369 KKQLKTLVQLPTSNMLLYYFDHEA--PFGPEEMKYSSRALHSFGIRDGDKIYVESKTK 424


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,208,688
Number of Sequences: 237096
Number of extensions: 1741182
Number of successful extensions: 3799
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3799
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7839245960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)