Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical pr...    55   4e-08
U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily ass...    28   7.2  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   9.5  
AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical ...    27   9.5  
AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical ...    27   9.5  

>U64598-4|AAN72420.1|  418|Caenorhabditis elegans Hypothetical
           protein C52B9.3b protein.
          Length = 418

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
 Frame = +2

Query: 8   RDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTC--GDTS 181
           R+ +ER FIRYY E+ E  +P +Y  L+  HG L+ LV++DL P+K   +   C   + +
Sbjct: 275 REQSERFFIRYYQEQKE--KPLQYKTLIDKHGNLEKLVTIDLTPKKEAVVKILCEEKEVN 332

Query: 182 EVRTVDVYRTVSDLKTRLERLAGFRLRRCGSF 277
           +  T+ +  TV D    L+   G +  R   F
Sbjct: 333 QEITISLEPTVLDFMKILDPKVGVKFTRMKLF 364


>U64598-3|AAK39213.1|  432|Caenorhabditis elegans Hypothetical
           protein C52B9.3a protein.
          Length = 432

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
 Frame = +2

Query: 8   RDAAERAFIRYYMEKPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTC--GDTS 181
           R+ +ER FIRYY E+ E  +P +Y  L+  HG L+ LV++DL P+K   +   C   + +
Sbjct: 289 REQSERFFIRYYQEQKE--KPLQYKTLIDKHGNLEKLVTIDLTPKKEAVVKILCEEKEVN 346

Query: 182 EVRTVDVYRTVSDLKTRLERLAGFRLRRCGSF 277
           +  T+ +  TV D    L+   G +  R   F
Sbjct: 347 QEITISLEPTVLDFMKILDPKVGVKFTRMKLF 378


>U80447-5|AAB37809.1|  439|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 345 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
 Frame = +3

Query: 105 SSIRWCPWTCGPRSACR-SHS-------RAGTRAKC-APSTFTGLFLI*KQDWSG*LASG 257
           S++ WCPW  G   +C   H+        AG  ++   P +FT + L  K D    L S 
Sbjct: 283 SAVEWCPWNSGHAFSCSWDHTIVEWDLELAGEISRIKGPKSFTSIDLHPKSDL---LISS 339

Query: 258 CEDA 269
           C DA
Sbjct: 340 CTDA 343


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 353 LYEYSCFVGYFISSGPCVSLS 291
           LYE SC++G+  SS   +SLS
Sbjct: 425 LYEKSCYLGFLTSSSSQISLS 445


>AF043706-2|AAB97604.2|  730|Caenorhabditis elegans Hypothetical
           protein ZC123.1 protein.
          Length = 730

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +2

Query: 50  KPEADRPDRYWELVHVHGKLDPLVSVDLRPEKRVQITFTCGDTS 181
           K  ADR D Y++ V  H KL     + +   KRV+  F   D +
Sbjct: 503 KRNADRLDTYYKAVEEHKKLVEEYEMAMEEHKRVKRQFFAPDNA 546


>AF022967-9|AAB69881.2|  205|Caenorhabditis elegans Hypothetical
           protein C13A2.11 protein.
          Length = 205

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = -1

Query: 503 FQVTAFCQGWRYIKFPIYRLPTLPSVQAVELADIECFSFESMMISSPDLMLYEYSCFVGY 324
           F +   C    +   P+ + P   S +  +  + +C   ++  +SSP L  Y Y  +   
Sbjct: 126 FSIIFKCYLSEFYNQPLSKCPNAESCEIPQNENYKCIHTDAKYVSSPSLEPYTYHFYTDE 185

Query: 323 FIS 315
           F S
Sbjct: 186 FRS 188


>AF022967-7|AAB69877.1|  485|Caenorhabditis elegans Hypothetical
           protein C13A2.5 protein.
          Length = 485

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/63 (22%), Positives = 26/63 (41%)
 Frame = -1

Query: 503 FQVTAFCQGWRYIKFPIYRLPTLPSVQAVELADIECFSFESMMISSPDLMLYEYSCFVGY 324
           F +   C    +   P+ + P   S +  +  + +C   ++  +SSP L  Y Y  +   
Sbjct: 416 FSIIFKCYLSEFYNRPLSKCPNAESCEIPQNENYKCIHTDAKYVSSPSLEPYTYHFYTDE 475

Query: 323 FIS 315
           F S
Sbjct: 476 FWS 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,455,103
Number of Sequences: 27780
Number of extensions: 276052
Number of successful extensions: 660
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)