Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060986.seq
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        29   0.055
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        29   0.055
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        29   0.055
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    24   1.2  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   3.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.8  
AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding prote...    22   4.8  
AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding pro...    22   4.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.3  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.3  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  KSQRPIDRIDTGSWCTCTASSIRWCPWTCGPRSACRSHSRA 170
           K+ + +D I+  S  T     IRWC W+ G    C++ +RA
Sbjct: 367 KNAKYLDVIERNSGAT--DKIIRWCTWSEGDLEKCKALTRA 405


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  KSQRPIDRIDTGSWCTCTASSIRWCPWTCGPRSACRSHSRA 170
           K+ + +D I+  S  T     IRWC W+ G    C++ +RA
Sbjct: 367 KNAKYLDVIERNSGAT--DKIIRWCTWSEGDLEKCKALTRA 405


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 0.055
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 48  KSQRPIDRIDTGSWCTCTASSIRWCPWTCGPRSACRSHSRA 170
           K+ + +D I+  S  T     IRWC W+ G    C++ +RA
Sbjct: 367 KNAKYLDVIERNSGAT--DKIIRWCTWSEGDLEKCKALTRA 405


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -2

Query: 151 HALLGPQVHGHQRIELAVHVHQLPVSIRS 65
           H      ++GHQ+    +H++  P S++S
Sbjct: 796 HQHAAQMIYGHQQSHHGLHINSSPSSVQS 824


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 255 GCEDAALLRGPRTERYAGSRRDEVPYE 335
           GC+DA+   G R  +Y  +R    P++
Sbjct: 620 GCKDASSYCGLRDRKYPDARAMGYPFD 646


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -2

Query: 154  LHALLGPQVHGHQRIELAVHVHQLPVSIRS 65
            LH+L     HG   + L +H   LP  +R+
Sbjct: 1081 LHSLAVELEHGAAGLRLCLHHRDLPCVLRA 1110


>AF393494-1|AAL60419.1|  144|Apis mellifera odorant binding protein
           ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 622 KDKCRVLSEMSLKQNKISLLDVSNLI 545
           +DK R +SE    Q +I  +D  NL+
Sbjct: 40  EDKARCMSEHGTTQAQIDDVDKGNLV 65


>AF166496-1|AAD51944.1|  144|Apis mellifera pheromone-binding
           protein ASP1 protein.
          Length = 144

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 622 KDKCRVLSEMSLKQNKISLLDVSNLI 545
           +DK R +SE    Q +I  +D  NL+
Sbjct: 40  EDKARCMSEHGTTQAQIDDVDKGNLV 65


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 476 NLDKTRLLGTLKICITNLDKT 538
           N  +   +GTL+ C+ +L+KT
Sbjct: 425 NCLRESFIGTLQRCLLSLEKT 445


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +2

Query: 476 NLDKTRLLGTLKICITNLDKT 538
           N  +   +GTL+ C+ +L+KT
Sbjct: 463 NCLRESFIGTLQRCLLSLEKT 483


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,520
Number of Sequences: 438
Number of extensions: 3601
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)