Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060984.seq
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1IBJ7 Cluster: Putative O-methyltransferase; n=1; Pseu...    36   1.2  
UniRef50_Q3A871 Cluster: Outer membrane receptor protein; n=1; P...    34   3.7  
UniRef50_Q2YSN8 Cluster: Probable membrane protein; n=16; Staphy...    33   4.9  
UniRef50_A7SYY4 Cluster: Predicted protein; n=2; Nematostella ve...    33   8.6  

>UniRef50_Q1IBJ7 Cluster: Putative O-methyltransferase; n=1;
           Pseudomonas entomophila L48|Rep: Putative
           O-methyltransferase - Pseudomonas entomophila (strain
           L48)
          Length = 283

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +1

Query: 85  SIHESVRYGDAHHIEQYRVSADIDIXISCGRPARNLYRIQRYCC 216
           +IH + R G A HI+Q+ VS +  +  +CG PA  L R+ R  C
Sbjct: 19  AIHVAARLGIAEHIDQHPVSLE-HLAQACGCPADGLQRLLRALC 61


>UniRef50_Q3A871 Cluster: Outer membrane receptor protein; n=1;
           Pelobacter carbinolicus DSM 2380|Rep: Outer membrane
           receptor protein - Pelobacter carbinolicus (strain DSM
           2380 / Gra Bd 1)
          Length = 740

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +1

Query: 4   HEHESVRYGDAHHIEQY-RVSADIEI*ISIHESVRYGD--AHHIEQYRVSADIDIXIS 168
           H+  S+ Y  A H++QY + S + E+  +  E +RY D   H  E Y   A+++I ++
Sbjct: 255 HDFRSLSYDQARHLDQYDKYSYNSELTGNAAEDIRYYDYNRHQFEGYSALANLEIRLT 312


>UniRef50_Q2YSN8 Cluster: Probable membrane protein; n=16;
           Staphylococcus|Rep: Probable membrane protein -
           Staphylococcus aureus (strain bovine RF122)
          Length = 205

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 427 MFLSSFTIYINFFLRIHTKGFFKQTVHIV 513
           MFL+ F IYI  FLR+H+  FF + + ++
Sbjct: 141 MFLNGFGIYIGRFLRLHSVYFFNEPIRVL 169


>UniRef50_A7SYY4 Cluster: Predicted protein; n=2; Nematostella
           vectensis|Rep: Predicted protein - Nematostella
           vectensis
          Length = 194

 Score = 32.7 bits (71), Expect = 8.6
 Identities = 13/48 (27%), Positives = 31/48 (64%)
 Frame = -1

Query: 161 YISISADTRYCSM*CASPYRTDS*IEIYISISADTRYCSM*CASPYRT 18
           Y++++ +T Y ++  ++PY T +   +Y++++  T Y ++  A+PY T
Sbjct: 117 YLTVNLETPYLTVNHSTPYLTVNHTTLYLTVNHTTPYLTVNLATPYLT 164


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 575,735,175
Number of Sequences: 1657284
Number of extensions: 10527151
Number of successful extensions: 20888
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 19381
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20863
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)