Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060984.seq
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193...    28   8.0  

>06_01_0263 +
           1936927-1936936,1937031-1937305,1937727-1938079,
           1938598-1938715,1938823-1938946,1939389-1939608,
           1939948-1940017,1940083-1940136,1940536-1940604,
           1941138-1941194,1941503-1941575,1942037-1942080,
           1942629-1942751,1943092-1943321,1943552-1943660,
           1944196-1944339,1944443-1944604,1944921-1945197,
           1945326-1945486,1945591-1945782,1946789-1946971,
           1946986-1947063,1947187-1947366,1947476-1947562
          Length = 1130

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 438 IIHNLHKLLFTNSYQRIFQTNSTYCNLST 524
           ++HNL KL     +QR+ Q +S  C+  T
Sbjct: 238 VVHNLQKLFDIGFFQRLVQEDSPLCSSIT 266


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,962
Number of Sequences: 37544
Number of extensions: 267101
Number of successful extensions: 475
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)