Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060984.seq
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12440.1 68416.m01549 extensin family protein contains simila...    28   5.0  

>At3g12440.1 68416.m01549 extensin family protein contains
           similarity to Swiss-Prot:Q38913 extensin 1 precursor
           (AtExt1) (AtExt4) [Arabidopsis thaliana]
          Length = 353

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 191 RFRAGRPHEXYISISADTRYCSM*CASPYRTDS*IEIYISISADTRYCS 45
           ++R+  P   Y S+S   RY S+     YR+DS    + S+S   RY S
Sbjct: 130 QYRSVSPPALYRSVSPPARYRSVSPPVRYRSDSPPAQFRSVSPPARYLS 178



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = -1

Query: 173 PHEXYISISADTRYCSM*CASPYRTDS*IEIYISISADTRYCSM*CASPYRTDS 12
           P   Y S S   +Y S+   + YR+ S   +Y S+S   RY S+     YR+DS
Sbjct: 109 PPARYSSDSPPAQYRSVSPPAQYRSVSPPALYRSVSPPARYRSVSPPVRYRSDS 162



 Score = 27.9 bits (59), Expect = 6.7
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -1

Query: 191 RFRAGRPHEXYISISADTRYCSM*CASPYRTDS*IEIYISISADTRYCSM*CASPYRTDS 12
           R+R+  P   Y S S   ++ S+   + Y +DS +  Y S+S   RY S+   + YR+ S
Sbjct: 148 RYRSVSPPVRYRSDSPPAQFRSVSPPARYLSDSPLVRYRSVSPPARYLSVSPPARYRSVS 207


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,461,105
Number of Sequences: 28952
Number of extensions: 230591
Number of successful extensions: 391
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)