Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    22   4.0  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.3  

>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 305 IRKYCLGDKPVSIELLSDQIKNXSRTVNYED 397
           IRKY LG+K +S +   D +   S  +   D
Sbjct: 370 IRKYYLGEKKLSKKTFRDLVAMFSDRIFIND 400


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  TLKCRSQSLFYLYNSIM 40
           T+K R ++L+Y +N I+
Sbjct: 204 TIKIRRRTLYYFFNLIV 220


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  TLKCRSQSLFYLYNSIM 40
           T+K R ++L+Y +N I+
Sbjct: 204 TIKIRRRTLYYFFNLIV 220


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  TLKCRSQSLFYLYNSIM 40
           T+K R ++L+Y +N I+
Sbjct: 204 TIKIRRRTLYYFFNLIV 220


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  TLKCRSQSLFYLYNSIM 40
           T+K R ++L+Y +N I+
Sbjct: 204 TIKIRRRTLYYFFNLIV 220


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = -2

Query: 90  TLKCRSQSLFYLYNSIM 40
           T+K R ++L+Y +N I+
Sbjct: 204 TIKIRRRTLYYFFNLIV 220


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +2

Query: 521 NGPXTRTXEYHQXFCKKVLRGSPSMGLKP 607
           NG  T   E  +  C+K+ R   S  L+P
Sbjct: 880 NGKPTCWRECDKATCEKLFRMKKSSALRP 908


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,128
Number of Sequences: 336
Number of extensions: 2622
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)