Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb...    93   3e-20
SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|ch...    30   0.36 
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   4.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    26   4.4  

>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 53/139 (38%), Positives = 67/139 (48%), Gaps = 4/139 (2%)
 Frame = +2

Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
           KPS   +++    +R  CLGDKP  +ELLSD       T    +NY DPN+N++ P+ SI
Sbjct: 71  KPSRKALYQALRSLRLNCLGDKPCELELLSDTSLTTGDTAVCNINYLDPNINVAIPVFSI 130

Query: 434 HGNHDDPVGQGSVSSLDILSITGLVIILXNGPXTRTXEYHQXFCKKVLRGSPSMGLKPFK 613
           HGNHDDP G G  S+LDIL +TGLV      P            +K        G+    
Sbjct: 131 HGNHDDPSGDGRYSALDILQVTGLVNYFGRVPENDNIVVSPILLQKGFTKLALYGISNV- 189

Query: 614 RSETFTSXLAEKKVGXXRP 670
           R E       E KV   RP
Sbjct: 190 RDERLYHSFRENKVKFLRP 208



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/42 (57%), Positives = 34/42 (80%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
           +T+RILI+SD H+G+ E DPVRG DSF++F E+L +A + DV
Sbjct: 16  NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDV 57


>SPAC630.15 |mug177||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -3

Query: 257 QQITS*KYQINITLYRKRQNFFKSYKAIFSAYRIIFHETKMN 132
           + +T+  + + I L R+ +     YK +FS YR+ F   ++N
Sbjct: 28  RNVTNVYFSLRILLNRQNEGNNCKYKLVFSLYRVSFRRMRLN 69


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 573 SYEARPLWDLSHLKDQRLSRLXWLK 647
           SYE  P W L +L+++++S + + K
Sbjct: 427 SYELSPFWKLDNLQEEKISDVLFSK 451


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/60 (30%), Positives = 26/60 (43%)
 Frame = -1

Query: 256 NRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEMS 77
           +RSPP S K  S C +    SS+ +       GS+      + E   +L  SS  H+  S
Sbjct: 167 HRSPPASCKRLSSCESSGSPSSRVV---GSLQGSYCPSGTHLHEGSLLLEDSSARHSSDS 223


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,451,720
Number of Sequences: 5004
Number of extensions: 45749
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)