Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1284 + 32376870-32376874,32376876-32376935,32377166-323773...    94   1e-19
08_01_0522 - 4545166-4545174,4545295-4545447,4545566-4545727,454...    84   1e-16
03_02_0130 + 5791925-5792011,5792252-5792288,5792803-5792983,579...    29   4.5  

>04_04_1284 +
           32376870-32376874,32376876-32376935,32377166-32377301,
           32377439-32377596,32377791-32377881,32377975-32378094,
           32378166-32378234,32378354-32378445,32378578-32378680,
           32378761-32378868,32378949-32379011,32379073-32379144,
           32379322-32379399,32379478-32379540,32379617-32379680,
           32379817-32379902,32380456-32380569,32380760-32380837,
           32381068-32381303,32381486-32381576,32381706-32381894,
           32382082-32382117
          Length = 703

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 3/84 (3%)
 Frame = +2

Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT---VNYEDPNLNISYPILSIH 436
           KPS + + K  EI+R+YCL D+PV  +++SDQ  N       VNYEDPN N+  P+ +IH
Sbjct: 82  KPSRSTLVKTIEILRRYCLNDQPVKFQVVSDQTINFPNRFGQVNYEDPNFNVGLPVFTIH 141

Query: 437 GNHDDPVGQGSVSSLDILSITGLV 508
           GNHDDP G  ++S++DILS   LV
Sbjct: 142 GNHDDPAGVDNLSAIDILSACNLV 165



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 24/39 (61%), Positives = 31/39 (79%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQ 218
           +TLR+L+A+D HLG+ME D +R  DSF AFEE+ SLA Q
Sbjct: 27  NTLRVLVATDCHLGYMEKDEIRRFDSFEAFEEICSLAEQ 65


>08_01_0522 -
           4545166-4545174,4545295-4545447,4545566-4545727,
           4545821-4545895,4545974-4546087,4546257-4546339,
           4546496-4546556,4546664-4546726,4546804-4546908,
           4547454-4547525,4547602-4547664,4547746-4547853,
           4547937-4548039,4548131-4548207,4548335-4548403,
           4548488-4548607,4548749-4548839,4549020-4549177,
           4549696-4549834,4551164-4551186
          Length = 615

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 38/84 (45%), Positives = 52/84 (61%), Gaps = 3/84 (3%)
 Frame = +2

Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNXSRTVNYEDPNLNISYPILSIH 436
           KPS++ + K  EIIR YCL D  V  +++SDQ   ++N    VN+EDPN NI  P+ ++H
Sbjct: 69  KPSISTLVKSMEIIRSYCLNDHQVQFQVVSDQAACLQNRFGRVNFEDPNFNIGLPVFTVH 128

Query: 437 GNHDDPVGQGSVSSLDILSITGLV 508
           G HD P G   +S+ DILS    V
Sbjct: 129 GTHDGPAGVDGLSATDILSACNFV 152



 Score = 49.6 bits (113), Expect = 2e-06
 Identities = 22/36 (61%), Positives = 28/36 (77%)
 Frame = +3

Query: 108 LRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAV 215
           LRIL+A+D HLG++E D +R  DSF  FEE+ SLAV
Sbjct: 16  LRILVATDCHLGYLEKDEIRRFDSFDTFEEICSLAV 51


>03_02_0130 +
           5791925-5792011,5792252-5792288,5792803-5792983,
           5793156-5793304,5793433-5793666,5794082-5794271,
           5794398-5794523,5794603-5794702,5794900-5795289
          Length = 497

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -1

Query: 403 IGVLIVNCS*XIFYLVRQQLYTNRFIPKTIFADYFCTFKHXIDRRFSLINRSPPKSI--K 230
           I +L++N S    Y V  Q   N  + KT       +F H + R  S + R P   +  +
Sbjct: 371 ITLLLINLSNTTGYNVTLQNDINVSLDKTASLHKHNSFSHSLRRAVSWLGRKPSSDVARR 430

Query: 229 STSHCTARD 203
              H TA+D
Sbjct: 431 EEYHLTAKD 439


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,856,958
Number of Sequences: 37544
Number of extensions: 257136
Number of successful extensions: 554
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)