Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              82   5e-16
SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)                   29   4.6  
SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3)                      29   4.6  
SB_8941| Best HMM Match : VWA (HMM E-Value=0)                          28   8.0  

>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 81.8 bits (193), Expect = 5e-16
 Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 4/72 (5%)
 Frame = +2

Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
           KPS   +     + RK+C+GD+   +E LSDQ  N +      VNYEDPNLN+S P+ SI
Sbjct: 63  KPSRRTLHASMALFRKFCMGDRVCEVEFLSDQSINFANNRFPWVNYEDPNLNVSIPVFSI 122

Query: 434 HGNHDDPVGQGS 469
           HGNHDDP G+G+
Sbjct: 123 HGNHDDPAGKGA 134



 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/36 (52%), Positives = 27/36 (75%)
 Frame = +3

Query: 120 IASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
           +A+D+HLG+ E D VRG DSF+ FEE L +A + +V
Sbjct: 14  MATDVHLGYAEKDQVRGNDSFVTFEETLQIAKKRNV 49


>SB_31784| Best HMM Match : RVT_1 (HMM E-Value=2e-35)
          Length = 963

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -1

Query: 259 INRSPPKSIKS-TSHCTARDKTSSKAIKLSSPRTGSFSMKPR 137
           + RSPP  + S TSHC A  K   + ++  SP T   ++ P+
Sbjct: 231 MRRSPPSPLHSETSHC-ATSKGEVEPVQRCSPETAKTALGPK 271


>SB_20571| Best HMM Match : RAMP (HMM E-Value=5.3)
          Length = 361

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -1

Query: 277 DRRFSLINRSPPKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKP 140
           DRR +   RS P ++   SHC   D T   A K SS   G+   +P
Sbjct: 259 DRRGNEAIRSSPHALYPRSHCAVED-TVRSATKESSGNEGAILSRP 303


>SB_8941| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2180

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = +2

Query: 329  KPVSIELLSDQIKNXSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSL 481
            K VS  L+S +I    RT+     N+   + +LS+  NHDDP+   S  SL
Sbjct: 1419 KRVSSTLISPEI----RTIIVSFGNME-KHELLSLAKNHDDPILSSSCKSL 1464


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,881,143
Number of Sequences: 59808
Number of extensions: 324420
Number of successful extensions: 716
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 715
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)