Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060982.seq
(682 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U37359-1|AAC78721.1| 680|Homo sapiens MRE11 homologue hMre11 pr... 99 7e-21
BT006730-1|AAP35376.1| 206|Homo sapiens MRE11 meiotic recombina... 99 7e-21
BC063458-1|AAH63458.1| 708|Homo sapiens MRE11 meiotic recombina... 99 7e-21
BC017823-1|AAH17823.1| 517|Homo sapiens Unknown (protein for IM... 99 7e-21
BC005241-1|AAH05241.1| 206|Homo sapiens MRE11A protein protein. 99 7e-21
AY584241-1|AAS79320.1| 708|Homo sapiens MRE11 meiotic recombina... 99 7e-21
AF303395-1|AAK18790.1| 708|Homo sapiens meiotic recombination 1... 99 7e-21
AF073362-1|AAC36249.1| 708|Homo sapiens endo/exonuclease Mre11 ... 99 7e-21
AF022778-1|AAD10197.1| 708|Homo sapiens DNA recombination and r... 99 7e-21
U42408-1|AAB58817.1| 517|Homo sapiens ladinin protein. 30 6.6
BC071890-1|AAH71890.1| 517|Homo sapiens ladinin 1 protein. 30 6.6
BC009742-1|AAH09742.1| 517|Homo sapiens ladinin 1 protein. 30 6.6
>U37359-1|AAC78721.1| 680|Homo sapiens MRE11 homologue hMre11
protein.
Length = 680
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 54.0 bits (124), Expect = 5e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D RG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAARGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>BT006730-1|AAP35376.1| 206|Homo sapiens MRE11 meiotic
recombination 11 homolog A (S. cerevisiae) protein.
Length = 206
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>BC063458-1|AAH63458.1| 708|Homo sapiens MRE11 meiotic
recombination 11 homolog A (S. cerevisiae) protein.
Length = 708
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>BC017823-1|AAH17823.1| 517|Homo sapiens Unknown (protein for
IMAGE:4687479) protein.
Length = 517
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>BC005241-1|AAH05241.1| 206|Homo sapiens MRE11A protein protein.
Length = 206
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>AY584241-1|AAS79320.1| 708|Homo sapiens MRE11 meiotic
recombination 11 homolog A (S. cerevisiae) protein.
Length = 708
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>AF303395-1|AAK18790.1| 708|Homo sapiens meiotic recombination 11
protein.
Length = 708
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>AF073362-1|AAC36249.1| 708|Homo sapiens endo/exonuclease Mre11
protein.
Length = 708
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>AF022778-1|AAD10197.1| 708|Homo sapiens DNA recombination and
repair protein protein.
Length = 708
Score = 99 bits (238), Expect = 7e-21
Identities = 46/85 (54%), Positives = 58/85 (68%), Gaps = 4/85 (4%)
Frame = +2
Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT----VNYEDPNLNISYPILSI 433
KPS + C E++RKYC+GD+PV E+LSDQ N + VNY+D NLNIS P+ SI
Sbjct: 66 KPSRKTLHTCLELLRKYCMGDRPVQFEILSDQSVNFGFSKFPWVNYQDGNLNISIPVFSI 125
Query: 434 HGNHDDPVGQGSVSSLDILSITGLV 508
HGNHDDP G ++ +LDILS G V
Sbjct: 126 HGNHDDPTGADALCALDILSCAGFV 150
Score = 55.6 bits (128), Expect = 2e-07
Identities = 23/42 (54%), Positives = 33/42 (78%)
Frame = +3
Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
+T +IL+A+DIHLGFME D VRG D+F+ +E+L LA + +V
Sbjct: 11 NTFKILVATDIHLGFMEKDAVRGNDTFVTLDEILRLAQENEV 52
Score = 37.5 bits (83), Expect = 0.044
Identities = 19/42 (45%), Positives = 27/42 (64%)
Frame = +1
Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYGT*AI*KIRDFHVF 636
+FG+ + ISPVLLQKG T++ALYG +I R + +F
Sbjct: 152 HFGRSMSVEKIDISPVLLQKGSTKIALYGLGSIPDERLYRMF 193
>U42408-1|AAB58817.1| 517|Homo sapiens ladinin protein.
Length = 517
Score = 30.3 bits (65), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 244 PKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR 137
P + + +T S ++K SSPRT SF MKP+
Sbjct: 346 PSKEEEADMSSPTQRTYSSSLKRSSPRTISFRMKPK 381
>BC071890-1|AAH71890.1| 517|Homo sapiens ladinin 1 protein.
Length = 517
Score = 30.3 bits (65), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 244 PKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR 137
P + + +T S ++K SSPRT SF MKP+
Sbjct: 346 PSKEEEADMSSPTQRTYSSSLKRSSPRTISFRMKPK 381
>BC009742-1|AAH09742.1| 517|Homo sapiens ladinin 1 protein.
Length = 517
Score = 30.3 bits (65), Expect = 6.6
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 244 PKSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR 137
P + + +T S ++K SSPRT SF MKP+
Sbjct: 346 PSKEEEADMSSPTQRTYSSSLKRSSPRTISFRMKPK 381
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,584,056
Number of Sequences: 237096
Number of extensions: 1557177
Number of successful extensions: 6445
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6436
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7727256732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -