Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF132144-1|AAD33591.1|  620|Drosophila melanogaster endo/exonucl...   108   8e-24
AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-P...   108   8e-24
AE014134-2032|AAF53071.3|  461|Drosophila melanogaster CG14916-P...    30   3.4  
BT022784-1|AAY55200.1|  113|Drosophila melanogaster IP07363p pro...    29   5.9  
AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA ...    29   5.9  
AE014297-1836|AAN13604.1|  601|Drosophila melanogaster CG31321-P...    29   7.8  

>AF132144-1|AAD33591.1|  620|Drosophila melanogaster
           endo/exonuclease Mre11 protein.
          Length = 620

 Score =  108 bits (259), Expect = 8e-24
 Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
 Frame = +2

Query: 263 AKPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNX-SRTVNYEDPNLNISYPILS 430
           A PS N + KC E++R+Y  GD+PVS+E+LSDQ     N  +++VNYEDPNLNI+ P+ S
Sbjct: 67  AVPSQNALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFS 126

Query: 431 IHGNHDDPVGQGSVSSLDILSITGLV 508
           IHGNHDDP G G +SSLD+LS +GLV
Sbjct: 127 IHGNHDDPSGFGRLSSLDLLSTSGLV 152



 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
           + +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DV
Sbjct: 13  NVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDV 54



 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYG 597
           YFG+WT  T V ISPVL++KG ++LALYG
Sbjct: 154 YFGRWTDLTQVEISPVLMRKGESQLALYG 182


>AE014134-2061|AAF53093.1|  620|Drosophila melanogaster CG16928-PA
           protein.
          Length = 620

 Score =  108 bits (259), Expect = 8e-24
 Identities = 51/86 (59%), Positives = 66/86 (76%), Gaps = 4/86 (4%)
 Frame = +2

Query: 263 AKPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQ---IKNX-SRTVNYEDPNLNISYPILS 430
           A PS N + KC E++R+Y  GD+PVS+E+LSDQ     N  +++VNYEDPNLNI+ P+ S
Sbjct: 67  AVPSQNALHKCIELLRRYTFGDRPVSLEILSDQGQCFHNAVNQSVNYEDPNLNIAIPVFS 126

Query: 431 IHGNHDDPVGQGSVSSLDILSITGLV 508
           IHGNHDDP G G +SSLD+LS +GLV
Sbjct: 127 IHGNHDDPSGFGRLSSLDLLSTSGLV 152



 Score = 58.4 bits (135), Expect = 8e-09
 Identities = 27/42 (64%), Positives = 33/42 (78%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
           + +RIL+A+D HLG+ E D VRGEDSF AFEE+L LAV  DV
Sbjct: 13  NVIRILVATDNHLGYGEKDAVRGEDSFTAFEEILELAVSEDV 54



 Score = 46.4 bits (105), Expect = 4e-05
 Identities = 19/29 (65%), Positives = 24/29 (82%)
 Frame = +1

Query: 511 YFGKWTXYTHVRISPVLLQKGLTRLALYG 597
           YFG+WT  T V ISPVL++KG ++LALYG
Sbjct: 154 YFGRWTDLTQVEISPVLMRKGESQLALYG 182


>AE014134-2032|AAF53071.3|  461|Drosophila melanogaster CG14916-PA
           protein.
          Length = 461

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
 Frame = +2

Query: 440 NHDDPVGQGSVSSLDILSITGLVIILXN------GPXTRTXEYHQXFCKKVL 577
           NHD PV +   + L +L  +GL+ I         GP T+T E++  F + V+
Sbjct: 48  NHDHPVFEDIRTILSVLKASGLMPIYEQVSDYEVGPPTKTNEFYSFFVRGVV 99


>BT022784-1|AAY55200.1|  113|Drosophila melanogaster IP07363p
           protein.
          Length = 113

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = -2

Query: 309 RIISVHLNXQLTEGLA*STDHLLKVSNQHHIVPQETKLLQKL*SYLLRVPDH 154
           R I +H       G    T H     +  H V Q ++++Q L S+ ++V  H
Sbjct: 54  RAIDLHPGVDQLHGCTHHTSHTTSQCSHQHFVQQTSRIIQVLLSHFVQVKPH 105


>AE013599-139|AAF57287.1|  683|Drosophila melanogaster CG7856-PA
           protein.
          Length = 683

 Score = 29.1 bits (62), Expect = 5.9
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -1

Query: 241 KSIKSTSHCTARDKTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEMSFSII 65
           K+ KS    TAR   S K+ + SSPR+ S   +   +   +   S  + D+ E +F+++
Sbjct: 387 KAPKSRKETTARSNLSRKSYRRSSPRSRSRGSRANALESPLQ-KSEDTPDNVEYAFALV 444


>AE014297-1836|AAN13604.1|  601|Drosophila melanogaster CG31321-PB
           protein.
          Length = 601

 Score = 28.7 bits (61), Expect = 7.8
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 609 NGLSPIEGEPRKTFLQKXW*YSXVRVXGPF 520
           NG   ++ EP+  + QK W Y    V  PF
Sbjct: 13  NGSGAVDAEPKLNYFQKLWRYRHYLVIEPF 42


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,563,827
Number of Sequences: 53049
Number of extensions: 465756
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1099
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2971922400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)