Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical pr...    77   9e-15
Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical pr...    31   1.0  
AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical ...    28   7.1  
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical p...    27   9.4  

>Z73978-2|CAA98292.2|  728|Caenorhabditis elegans Hypothetical
           protein ZC302.1 protein.
          Length = 728

 Score = 77.4 bits (182), Expect = 9e-15
 Identities = 37/84 (44%), Positives = 56/84 (66%), Gaps = 4/84 (4%)
 Frame = +2

Query: 269 PSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRTV----NYEDPNLNISYPILSIH 436
           PS     + T+++R+YCL   P+++E LSD   N +++V    NY D NLN+  PI +IH
Sbjct: 120 PSREVQHRVTQLLRQYCLNGNPIALEFLSDASVNFNQSVFGHVNYYDQNLNVGLPIFTIH 179

Query: 437 GNHDDPVGQGSVSSLDILSITGLV 508
           GNHDD  G+G +++LD+L  +GLV
Sbjct: 180 GNHDDLSGKG-LTALDLLHESGLV 202



 Score = 37.1 bits (82), Expect = 0.012
 Identities = 17/39 (43%), Positives = 25/39 (64%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQ 218
           D ++IL+A+DIH G+ EN      D+   FEEVL +A +
Sbjct: 64  DIIKILVATDIHCGYGENKANIHMDAVNTFEEVLQIATE 102



 Score = 35.5 bits (78), Expect = 0.035
 Identities = 16/28 (57%), Positives = 20/28 (71%)
 Frame = +1

Query: 514 FGKWTXYTHVRISPVLLQKGLTRLALYG 597
           FGK +      +SP+LL+KG TRLALYG
Sbjct: 205 FGKHSNIQEFIVSPILLRKGETRLALYG 232


>Z32680-2|CAA83597.1| 1218|Caenorhabditis elegans Hypothetical
           protein C28A5.2 protein.
          Length = 1218

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 341 IELLSDQIKNXSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVIILX 520
           +  L+  ++   RT NY   +LN+SY +        +P GQ S +  +I+ I   + +  
Sbjct: 515 VRQLASTVREHPRTTNYPSRSLNLSYEVSGALA-RTNPNGQLSAADNNIVLINDSISLDH 573

Query: 521 NGPXT 535
           N P T
Sbjct: 574 NLPDT 578


>Z32680-1|CAA83599.1| 1223|Caenorhabditis elegans Hypothetical
           protein C28A5.1 protein.
          Length = 1223

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/65 (27%), Positives = 31/65 (47%)
 Frame = +2

Query: 341 IELLSDQIKNXSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLDILSITGLVIILX 520
           +  L+  ++   RT NY   +LN+SY +        +P GQ S +  +I+ I   + +  
Sbjct: 515 VRQLASTVREHPRTTNYPSRSLNLSYEVSGALA-RTNPNGQLSAADNNIVLINDSISLDH 573

Query: 521 NGPXT 535
           N P T
Sbjct: 574 NLPDT 578


>AL132952-1|CAB61134.2|  214|Caenorhabditis elegans Hypothetical
           protein Y51H4A.1 protein.
          Length = 214

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -1

Query: 253 RSPPKSIKSTSHCTARDKTSSKAIKLS--SPRTGSFSM 146
           ++P  S KSTS C + +  S ++I+ S  SPR  SF +
Sbjct: 101 KTPAGSPKSTSSCISSEILSEQSIEFSSISPRPSSFPL 138


>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical
           protein F25C8.3b protein.
          Length = 3175

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 317 CLGDKPVSIELLSDQIKNXSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLD 484
           CL   P +    S       R +N  +P+L+ S  +LSI  + +D V   S  S++
Sbjct: 638 CLAPHPTTNSRRSSLNTLSRRGINRSNPSLSNSVEVLSIRDDAEDDVSNISSKSIE 693


>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical
           protein F25C8.3a protein.
          Length = 3184

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +2

Query: 317 CLGDKPVSIELLSDQIKNXSRTVNYEDPNLNISYPILSIHGNHDDPVGQGSVSSLD 484
           CL   P +    S       R +N  +P+L+ S  +LSI  + +D V   S  S++
Sbjct: 638 CLAPHPTTNSRRSSLNTLSRRGINRSNPSLSNSVEVLSIRDDAEDDVSNISSKSIE 693


>U39999-13|AAA81111.1|  320|Caenorhabditis elegans Hypothetical
           protein F41G3.2 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -1

Query: 202 KTSSKAIKLSSPRTGSFSMKPR*ISEAINILSVSSGDHAEMS 77
           ++ S+   ++SP   S+ M P+  S + N+ S  S DH + S
Sbjct: 83  RSRSELALVTSPLPSSYQMSPKKTSPSSNMRSAQSYDHLDNS 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,364,443
Number of Sequences: 27780
Number of extensions: 245055
Number of successful extensions: 547
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)