Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.51 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   2.7  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   3.6  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    23   3.6  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    22   4.7  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   8.2  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.51
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 60   KIMIENDISAWSPXDTLRILIASDIHLG 143
            +I+ EN+I A  P DT+ I+ A +   G
Sbjct: 951  RIVAENEIGASDPSDTVTIITAEEAPSG 978


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +3

Query: 606 HLKDQRLSRLXWLKKKWE 659
           +LKDQ L+   WL+ +W+
Sbjct: 61  NLKDQILTTNVWLEHEWQ 78


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 301 FCTFKHXIDRRFSLINRSPPKSIKS 227
           F   K   DRR        PKSIKS
Sbjct: 372 FAEIKEKCDRRTGKTTEENPKSIKS 396


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 301 FCTFKHXIDRRFSLINRSPPKSIKS 227
           F   K   DRR        PKSIKS
Sbjct: 83  FAEIKEKCDRRTGKTTEENPKSIKS 107


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 11/25 (44%), Positives = 11/25 (44%)
 Frame = -1

Query: 301 FCTFKHXIDRRFSLINRSPPKSIKS 227
           F   K   DRR        PKSIKS
Sbjct: 372 FADIKEKCDRRNGKTTEENPKSIKS 396


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/19 (36%), Positives = 15/19 (78%)
 Frame = -1

Query: 463 LANGIIMIAVY*ENRVRNI 407
           L N ++++AVY  +++RN+
Sbjct: 81  LGNVLVILAVYHTSKLRNV 99


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,742
Number of Sequences: 438
Number of extensions: 3102
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)