Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060982.seq
         (682 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ...    94   9e-20

>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
           identical to DNA repair and meiosis protein (Mre11)
           GI:5524769 from [Arabidopsis thaliana]
          Length = 720

 Score = 93.9 bits (223), Expect = 9e-20
 Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +2

Query: 266 KPSVNXMFKCTEIIRKYCLGDKPVSIELLSDQIKNXSRT---VNYEDPNLNISYPILSIH 436
           KPS   + K  EI+R++CL DKPV  +++SDQ  N       VNYEDP+ N+  P+ SIH
Sbjct: 63  KPSRTTLVKAIEILRRHCLNDKPVQFQVVSDQTVNFQNAFGQVNYEDPHFNVGLPVFSIH 122

Query: 437 GNHDDPVGQGSVSSLDILSITGLV 508
           GNHDDP G  ++S++DILS   LV
Sbjct: 123 GNHDDPAGVDNLSAIDILSACNLV 146



 Score = 55.6 bits (128), Expect = 3e-08
 Identities = 24/42 (57%), Positives = 32/42 (76%)
 Frame = +3

Query: 102 DTLRILIASDIHLGFMENDPVRGEDSFIAFEEVLSLAVQCDV 227
           DTLR+L+A+D HLG+ME D +R  DSF AFEE+ S+A +  V
Sbjct: 8   DTLRVLVATDCHLGYMEKDEIRRHDSFKAFEEICSIAEEKQV 49


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,494,828
Number of Sequences: 28952
Number of extensions: 224381
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1438152744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)