Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060981.seq
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    25   0.44 
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    25   0.44 
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    25   0.44 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.0  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    24   1.3  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   3.1  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.1  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   4.1  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    21   7.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    21   9.5  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 RTSPPSSKATATRILSILKLSFFLPPLASK 396
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 250 RSSPTTATAIASATVTIQNVSNTIPPFASR 279


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 RTSPPSSKATATRILSILKLSFFLPPLASK 396
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 198 RSSPTTATAIASATVTIQNVSNTIPPFASR 227


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +1

Query: 307 RTSPPSSKATATRILSILKLSFFLPPLASK 396
           R+SP ++ A A+  ++I  +S  +PP AS+
Sbjct: 381 RSSPTTATAIASATVTIQNVSNTIPPFASR 410


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 31  SAASAIPSLVNAFSSSKPPQTDNPSAR 111
           +AA  +P + N  S   PP T+N  A+
Sbjct: 209 TAAFMLPIIHNLLSDKNPPNTENNCAQ 235


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/49 (26%), Positives = 18/49 (36%)
 Frame = +3

Query: 420 WTTADVTVEGVNVLGHPFIRSHYYWRSRP*HQATLPCDLGYINPIIKSP 566
           W +   +   V  L  PF    +Y +S   H    P   G   P  +SP
Sbjct: 232 WLSGGASASKVT-LSVPFYGHSWYLQSTSNHDVGAPATTGIAGPFTQSP 279


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 237 FSTPVLDLTGTETKSNS-VTVQSLPNVSSIIKGYRDAYLVNLEAVV 371
           F + V +L G     N  VT+  LPNV+S +     A   NLE VV
Sbjct: 197 FVSLVRELRGAFKAENLLVTLTVLPNVNSTVYYDPRALSPNLEFVV 242


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -2

Query: 301  DCTVTLFDLVSVPVRSSTGVEKG*SNVEETVP 206
            DCT     +   P + +TGV+ G S+ E   P
Sbjct: 1002 DCTKPPEPVTPAPPQVTTGVDTGASSTEHMHP 1033


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 510 HQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVL 629
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 239 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 278


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +3

Query: 510 HQATLPCDLGYINPIIKSPIPYTNHPRLNIYFHQSPDAVL 629
           H   L      + P  K  +P  NH  LN+   + P A++
Sbjct: 131 HPPHLSSHPAIVTPGPKQELPDLNHKPLNLTIKKMPIAIV 170


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 47  MAEAAETTKGTISWC 3
           + +   +T GT+SWC
Sbjct: 315 LCDVCYSTIGTVSWC 329


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 623 GVRGLMEIDVKSGVVGVWN 567
           GVR L+E+D  S V   W+
Sbjct: 298 GVRLLLEVDAPSHVNAGWS 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,687
Number of Sequences: 336
Number of extensions: 2778
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)