Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060981.seq
(689 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 32 0.068
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 29 0.84
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.1
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 28 1.5
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 27 2.6
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 27 2.6
SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ... 26 4.5
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 4.5
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 26 5.9
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 5.9
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 25 7.8
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce... 25 7.8
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 25 7.8
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 25 7.8
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.8
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 32.3 bits (70), Expect = 0.068
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 6/105 (5%)
Frame = +1
Query: 310 TSPPSSKATATRI-LSILKLSFFLPPLASKYQSQLTFVGLLLTSQLKESMCWATPSS-AR 483
T+ SS A T + S L + L S S V S + ++ AT SS ++
Sbjct: 724 TAMSSSSAIPTSVNSSTLITASSSNTLLSSITSSSAIVSSTTVSNISSNLPSATASSQSQ 783
Query: 484 ITIGG-LALSIKLPSPA---ISATSTRSSNPRFHTPTTPDLTSIS 606
+T LA S+ L S + IS +ST N FH PT TS S
Sbjct: 784 LTNSSTLATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 28.7 bits (61), Expect = 0.84
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 4/74 (5%)
Frame = +3
Query: 204 PGTVSSTFDHPFSTPVLDLTGTETKSNSVTVQS----LPNVSSIIKGYRDAYLVNLEAVV 371
P ++ FD S P+ + G E ++ + ++ + + +K RD YL NLEA
Sbjct: 337 PCSIQLFFD---SVPLEKINGLEQRALRLLAETKQIDMNRMKDYLKTRRDQYLTNLEA-- 391
Query: 372 FPSAPSLKIPVTVD 413
FPS+ +KI +T+D
Sbjct: 392 FPSSLFMKI-LTLD 404
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/98 (24%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Frame = +1
Query: 307 RTSPPSSKATATRILSILKLSFFLPPLASKYQSQLTFVGLLLTSQLKESMCWA-TPSSAR 483
+ + P SK A+ S LK PPL++ Q + +LL + + + +P +
Sbjct: 166 QVASPLSKKAASLTSSPLKDFQSSPPLSTVLQKSHSLHDILLDTNDDDHFPFTQSPLTKT 225
Query: 484 ITIG-GLALSIKLPSPAISATSTRSSNPRFHTPTTPDL 594
+ L S + P + + ++ +SN H P+TP+L
Sbjct: 226 KSFNDALTSSSSILKPCMPSIASPTSNRLSHAPSTPNL 263
Score = 26.6 bits (56), Expect = 3.4
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +1
Query: 424 LLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSI 603
L LTS + + PSS R+ I L S P ++S+ FHTPT P T +
Sbjct: 95 LSLTSSNQSTNTNLNPSS-RVEIINLNSS---PPNSLSSQPKHQEFHLFHTPTIPRTTQL 150
Query: 604 SINPLTP 624
S +P
Sbjct: 151 SSKTSSP 157
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Frame = +3
Query: 240 STPVLDLTGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTV 410
S P+ TG +T+ QSL N+S S I R N A FPS S +P V
Sbjct: 301 SPPLAPKTGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKV 360
Query: 411 DL 416
DL
Sbjct: 361 DL 362
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/74 (24%), Positives = 33/74 (44%)
Frame = +3
Query: 396 IPVTVDLCWTTADVTVEGVNVLGHPFIRSHYYWRSRP*HQATLPCDLGYINPIIKSPIPY 575
IPV++ + + + V+ L P + +W S A + + PI +P PY
Sbjct: 369 IPVSLQVLTPNSSLKVDPTTPLTAPIHATESFWPSAAAAAAAVHNNANSYMPI--TPTPY 426
Query: 576 TNHPRLNIYFHQSP 617
N+ ++ Y +Q P
Sbjct: 427 PNNAKIFGYPNQPP 440
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 27.1 bits (57), Expect = 2.6
Identities = 17/58 (29%), Positives = 33/58 (56%)
Frame = +1
Query: 436 SQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISI 609
+QL + A+P AR ++L+ L SP++S + ++ P +H+P + LT+ S+
Sbjct: 291 NQLNKFHLDASPRQARPR-RSVSLATGLNSPSVSKPPSSATGPLYHSPQS-SLTNSSV 346
>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 324
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +1
Query: 10 EIVPLVVSAASAIPSLVNAFSSSKPPQTD 96
+ +P++ ++A IPSL A SK P T+
Sbjct: 244 DFIPMIFTSALLIPSLYPALERSKLPFTE 272
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +1
Query: 319 PSSKATATRILSILKLSFFLPPL 387
PSSKAT I S +L++ +PPL
Sbjct: 66 PSSKATRPYIPSYTRLTYSVPPL 88
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 421 GLLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTR 552
G++ +K A S +++++ G+A ++ P AISA+ R
Sbjct: 508 GMVRVFDVKSEELLAEKSISKVSLTGIAFAVNRPEFAISASDGR 551
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -2
Query: 463 PSTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 359
P TL +T+T V + + +L++ AEGK TAS
Sbjct: 517 PKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +1
Query: 496 GLALSIKLPSPAISATSTRSSNPRFHTPTT---PDLTSISINPLT 621
G+A+ LP P S+++ S+ +H T+ P +TS + +T
Sbjct: 159 GIAVLAVLPQPISSSSTYNSTTSSYHNSTSTPPPTITSTKASTVT 203
>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 357
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 85 GVWKKRKH*PRTEWPKRQKRLKAQFPGA 2
G WKK + + EW K ++ KA++ A
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEWKKA 146
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 274 PNRTVSLCNHYRTSPPSSKATATRILSILKLSFFLPP 384
P++ +S +Y TSPPSS ++ + ++ S L P
Sbjct: 83 PDKAIS--QYYETSPPSSTSSLSSNNQLMNSSVILSP 117
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.4 bits (53), Expect = 7.8
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 121 YPWSAQTGYQFEGVWKKRKH*PRTEWP 41
YP +A+ + FEG++ +H P +P
Sbjct: 122 YPKAAKAVFDFEGIFCSSRHIPGVRFP 148
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +1
Query: 463 ATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSIS 606
++ SS++ + + S SP+ S +S++ S+ F T TTP +S S
Sbjct: 191 SSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSS 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,531,931
Number of Sequences: 5004
Number of extensions: 48196
Number of successful extensions: 240
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -