Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060981.seq
(689 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 31 0.65
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 31 0.65
08_02_0875 + 22103903-22106293 30 2.0
03_04_0192 + 18302114-18302362,18302664-18302732,18302752-183028... 30 2.0
03_01_0519 - 3897838-3897857,3898040-3898346 30 2.0
10_08_0134 + 15107411-15107939,15108049-15108124,15108332-151084... 29 3.5
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053... 29 3.5
04_01_0041 - 464695-464850,467485-469029 29 3.5
01_06_0404 + 29098141-29098214,29098459-29098673,29099491-290995... 29 3.5
01_05_0227 - 19512866-19514983 29 4.6
10_07_0077 + 12645091-12646750,12647612-12648273 28 6.1
09_04_0275 + 16302086-16303721,16304182-16304734,16305491-163055... 28 6.1
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 28 6.1
07_01_0544 + 4012457-4012796,4012897-4013069 28 8.0
06_01_0018 + 194295-194640,194679-194917,195737-195885,196248-19... 28 8.0
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 31.5 bits (68), Expect = 0.65
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Frame = +1
Query: 493 GGLALSIKLPSPAISATSTR-SSNPR--FHTPTTPDLTSISINPLTP 624
G L + I PSPA + S+R S +PR F TP T T+ S +P +P
Sbjct: 19 GNLTVFITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 31.5 bits (68), Expect = 0.65
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = +1
Query: 529 AISATSTRSSNPRFHTPTTP 588
A S+T+TR S PR H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
>08_02_0875 + 22103903-22106293
Length = 796
Score = 29.9 bits (64), Expect = 2.0
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +1
Query: 469 PSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 627
P++ I G L + P+P ++A S R NP+ PDL + +N L +
Sbjct: 490 PATGTILFEGTHLGVH-PAPVVAAFSARGPNPQSPEILKPDLIAPGLNILAAW 541
>03_04_0192 +
18302114-18302362,18302664-18302732,18302752-18302823,
18303545-18303710,18303967-18304604
Length = 397
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +1
Query: 436 SQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPT-TPDLTSISIN 612
SQ K + TP+S++ T G A+ PA + + ++N TPT P + + N
Sbjct: 19 SQSKRASASLTPASSKATAGAAAVGRAARIPASRSRGSATTNKAMATPTVAPSSRAKASN 78
Query: 613 P 615
P
Sbjct: 79 P 79
>03_01_0519 - 3897838-3897857,3898040-3898346
Length = 108
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRS 555
PPL + Q QL+ G + + P +++ GG+ALS + PSP S++S ++
Sbjct: 42 PPLLQQQQQQLSTTG----AWAQPPRLQQAPHVQQLSTGGVALSQRQPSPPHSSSSRQN 96
>10_08_0134 +
15107411-15107939,15108049-15108124,15108332-15108459,
15108960-15109037,15109734-15110263
Length = 446
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 630 LVRRQGIDGNRC*VWGGWCMESGI 559
++RR G R +GGWC E G+
Sbjct: 380 ILRRDGAAPGRAFAYGGWCSEGGV 403
>04_03_0795 -
19704354-19704464,19705152-19705214,19705298-19705378,
19705468-19705623,19705711-19705785,19706477-19706587,
19707206-19707304,19707453-19707546,19707779-19707838,
19709262-19709334,19711448-19711490,19711533-19711606,
19711985-19712075,19712170-19712214,19712533-19712589,
19713440-19713544,19713817-19713932,19714625-19714634,
19714810-19714920,19715502-19715594,19715664-19715690,
19715736-19715798,19716326-19716451,19716812-19716949,
19717164-19717832,19717949-19718123,19718269-19718450
Length = 1015
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +1
Query: 220 QRLIIPFQRLYLILLAPKPNRTVSLCNHYRTSPPSSKATATRILSILKLSFFLP-PLASK 396
+RL++ + R P R LC + T+PPS A+ + + ++ +S P L +
Sbjct: 165 ERLLVAYLRHERCFSFPNVERICKLCRRHVTTPPSPGASGSSLHTVEIISVQKPEDLLRR 224
Query: 397 YQSQLTFVGLLLT 435
+Q V ++T
Sbjct: 225 FQFPELIVDAVIT 237
>04_01_0041 - 464695-464850,467485-469029
Length = 566
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 246 PVLDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPS-APSLKIPVTVD 413
P D++ T +SN + V +LP VSS + Y D ++ + P P ++ V +D
Sbjct: 46 PFTDVSLTLCRSNYIGVTNLPIVSSECEAYYDDFVSGADFTARPQVVPPWRLAVPLD 102
>01_06_0404 +
29098141-29098214,29098459-29098673,29099491-29099596,
29099686-29100235,29100332-29100429,29100519-29100764,
29100867-29100981,29101092-29101305,29101402-29101991
Length = 735
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 484 ITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 627
IT L +K P+P ++A S+R NP PD+T+ ++ + Y
Sbjct: 436 ITASDARLGVK-PAPVMAAFSSRGPNPITPQILKPDITAPGVSVIAAY 482
>01_05_0227 - 19512866-19514983
Length = 705
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 445 STVTSAVVQQRSTVTGILRLGAEGKTTASRL 353
S +T + +QQ + ++ LG GKTT ++L
Sbjct: 18 SKLTESSIQQNIKIVSVIGLGGSGKTTLAKL 48
>10_07_0077 + 12645091-12646750,12647612-12648273
Length = 773
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +1
Query: 478 ARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPL 618
A ++ GG L ++ PSP ++A S+R N PD+ +N L
Sbjct: 483 AILSFGGTVLGVR-PSPVVAAFSSRGPNTVVPEILKPDMIGPGVNIL 528
>09_04_0275 +
16302086-16303721,16304182-16304734,16305491-16305519,
16305639-16305897,16305969-16306110
Length = 872
Score = 28.3 bits (60), Expect = 6.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 484 ITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPL 618
+T G AL ++ P+P ++A S+R N + PD+ +N L
Sbjct: 477 LTFAGTALDVR-PAPVVAAFSSRGPNRQVAQLLKPDVIGPGVNIL 520
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/49 (32%), Positives = 19/49 (38%)
Frame = +1
Query: 469 PSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINP 615
P A GG PSP + A S R + R H P S S +P
Sbjct: 139 PPHAGYNCGGGGRRAPSPSPQMHAASRRHHHGRHHQQVAPKARSASASP 187
>07_01_0544 + 4012457-4012796,4012897-4013069
Length = 170
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 496 GLALSIKLPSPAIS-ATSTRSSNPRFHTPTTPDLTSISINPLTP 624
GL + K+ +P +S S ++ P TPTTP T P TP
Sbjct: 97 GLPDACKVQTPPVSNCKSGAAAPPAGQTPTTPAGTGSKATPATP 140
>06_01_0018 +
194295-194640,194679-194917,195737-195885,196248-196342,
196685-196780,197248-197399,198683-198823,199068-199319,
199463-199603,199686-200003,200146-200232,201025-202006,
202091-202179,202968-203072,203155-204306,204844-205359,
205455-205650,206299-207182
Length = 1979
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 520 PSPAISATSTRSSNPRFHTPTTPDLT 597
PSP +A TRSS+ R H TP T
Sbjct: 9 PSPTSTARETRSSSARGHASPTPTPT 34
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,591,275
Number of Sequences: 37544
Number of extensions: 353354
Number of successful extensions: 1243
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1242
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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