Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060981.seq
(689 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3) 30 1.5
SB_59428| Best HMM Match : Ank (HMM E-Value=2.2) 30 2.0
SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2) 29 4.7
SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18) 29 4.7
SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22) 28 6.2
SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7) 28 8.2
SB_34777| Best HMM Match : VWA (HMM E-Value=0) 28 8.2
SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54) 28 8.2
>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 358
Score = 31.5 bits (68), Expect = 0.67
Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 2/122 (1%)
Frame = +1
Query: 262 LAPKPNRTVSLCNHYRTSPPSSKAT--ATRILSILKLSFFLPPLASKYQSQLTFVGLLLT 435
+ P P V+L + S+ AT A L PP + T
Sbjct: 114 ITPIPINPVTLGGQFTREYTSTTATRRAGSAQGRLTTKKKTPPRRTNLLEAFTAAAGTPA 173
Query: 436 SQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINP 615
+ S+ A+P+ R ++G LA + + +P +T S R TP+TP S P
Sbjct: 174 GSRRSSISPASPA-LRSSLGSLAPTSRTSTPTSRSTPRSRSRSRARTPSTPSTPSTPSTP 232
Query: 616 LT 621
T
Sbjct: 233 ST 234
>SB_33380| Best HMM Match : Herpes_capsid (HMM E-Value=3)
Length = 474
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 494 PIVMRADEGVAQHIDSF-NCDVSSSPTKVNCDWYFEARGGRKNDSFKIDKIRVAVAFDDG 318
PI + D + Q + ++ C + P + W+F + G K DS + + + G
Sbjct: 256 PIEVFLDGKMVQMMLAYVGCVRAHLPNAADQPWFFLSNTGAKIDSNNVQSLLRSFQRSTG 315
Query: 317 GDVR**LHSDTVRFGFGASK 258
V +HS VR G GA++
Sbjct: 316 VQVSKPIHSTAVRCGSGATE 335
>SB_59428| Best HMM Match : Ank (HMM E-Value=2.2)
Length = 351
Score = 29.9 bits (64), Expect = 2.0
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Frame = +3
Query: 255 DLTGTETKS--NSVTVQSLPNVSSIIKGYRDAYL-VNLEAVVFPSAPSLKIPVTVDLCWT 425
D++ E K+ + Q+ +++S + Y L + E V+ P + +PV V L
Sbjct: 138 DISNDEEKTLLHYAAEQNFYHLASTLMKYCPGLLALKTEPVLAPVKKAAMLPVEVALMKE 197
Query: 426 TADVTVEGVNVLGHPFIRSHYYWR 497
DV + + H I+S ++WR
Sbjct: 198 NDDVAAVMIRRMSHERIQSLFFWR 221
>SB_13394| Best HMM Match : Chordopox_A13L (HMM E-Value=3.2)
Length = 694
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 226 LIIPFQRLYLILLAPKPNRTVSLCNHYRTSPPSSKATATRILS 354
+II I++ + + T+ +H R+SPPS+ T + LS
Sbjct: 265 IIITINNTITIIIITRASTTIITSHHRRSSPPSTSPTQSPSLS 307
>SB_1375| Best HMM Match : Extensin_2 (HMM E-Value=0.18)
Length = 796
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +1
Query: 520 PSPAISATSTRSSN-PRFHTPTTPDLTSISINPLT 621
P IS TS SS PR H PTTP T + P T
Sbjct: 257 PQTTISITSIISSAIPRGHLPTTPSTTPQATPPST 291
>SB_18127| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 963
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +1
Query: 574 TPTTPDLTSISINPLTPY 627
TPT PD+T +SI L PY
Sbjct: 75 TPTRPDVTQLSITGLKPY 92
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 520 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 624
P P ++ S +S+NPR HTP P S + PLTP
Sbjct: 77 PRP-LTPPSRQSNNPRPHTP--PSCQSNTPRPLTP 108
>SB_10419| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 848
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/62 (30%), Positives = 31/62 (50%)
Frame = +1
Query: 475 SARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY*XEFAAGVK 654
S+ +T+ L+ + LPS + S + SS R H +SIS++ T +F + VK
Sbjct: 167 SSHLTVENLSRRVSLPSQSSSLANDLSSKVRVHKKLGQRSSSISLSNSTKM-DKFYSSVK 225
Query: 655 AS 660
S
Sbjct: 226 DS 227
>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
Length = 3445
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 466 WPSTLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLT 350
+P+T +P+T S V Q+R T A TTA T
Sbjct: 305 YPTTASPATSPSTVAQERETTMAHEATAAPATTTAPETT 343
>SB_34976| Best HMM Match : N_methyl (HMM E-Value=1.7)
Length = 177
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/63 (25%), Positives = 32/63 (50%)
Frame = -2
Query: 460 STLTPSTVTSAVVQQRSTVTGILRLGAEGKTTASRLTRYASR*PLMMEETFGSDCTVTLF 281
+TLT T+ ++ + S+ T + KTT S +T ++ P+++ + S ++L
Sbjct: 90 ATLTTETIAASQLTPSSSATTTTTIRTNTKTTESTITSLSTSLPVILPTSSKSSSALSLE 149
Query: 280 DLV 272
LV
Sbjct: 150 VLV 152
>SB_34777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1268
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 294 VQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPV 404
++ + NV+ + RDA+ V AVV+ S PSL+IP+
Sbjct: 1101 IEFVKNVTKMFPLSRDAFSVG--AVVYGSEPSLEIPL 1135
>SB_20369| Best HMM Match : PRA-PH (HMM E-Value=0.54)
Length = 174
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +1
Query: 415 FVGLLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDL 594
++ +L+ ++S A ++ +G + + P ATS+RS++ HTP T ++
Sbjct: 17 YIIILIMGNREDSNTVAALAAMWNDVGPKSKTTDRPRTTTPATSSRSASAASHTPETNNI 76
Query: 595 TSISINPLT 621
IN T
Sbjct: 77 LQERINLAT 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,440,890
Number of Sequences: 59808
Number of extensions: 385884
Number of successful extensions: 1388
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1079
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1359
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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