Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060981.seq
(689 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L00692-1|AAA51969.1| 252|Homo sapiens carcinoembryonic antigen ... 34 0.55
D90278-1|BAA14322.1| 177|Homo sapiens CD66d protein. 34 0.55
D90277-1|BAA14321.1| 252|Homo sapiens nonspecific cross-reactin... 34 0.55
BC106728-1|AAI06729.1| 252|Homo sapiens carcinoembryonic antige... 34 0.55
L00693-1|AAA51970.1| 212|Homo sapiens carcinoembryonic antigen ... 32 2.2
BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongatio... 32 2.2
AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription ... 32 2.2
AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongatio... 32 2.2
AF103359-1|AAD20528.1| 119|Homo sapiens immunoglobulin heavy ch... 31 5.1
BC139779-1|AAI39780.1| 606|Homo sapiens zinc finger protein 652... 30 6.8
BC008988-1|AAH08988.1| 378|Homo sapiens T-cell immunoglobulin a... 30 6.8
AB023141-1|BAA76768.2| 617|Homo sapiens KIAA0924 protein protein. 30 6.8
X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein. 30 8.9
U12767-1|AAB02581.1| 587|Homo sapiens mitogen induced nuclear o... 30 8.9
S81243-1|AAB36006.1| 684|Homo sapiens CHN protein. 30 8.9
M22433-1|AAA51965.1| 141|Homo sapiens carcinoembryonic antigen ... 30 8.9
D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan rec... 30 8.9
AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfam... 30 8.9
AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfam... 30 8.9
AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfam... 30 8.9
AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfam... 30 8.9
AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfam... 30 8.9
>L00692-1|AAA51969.1| 252|Homo sapiens carcinoembryonic antigen
protein.
Length = 252
Score = 33.9 bits (74), Expect = 0.55
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSI 513
PP AS ++ + + GLLLT+ L W P++A++TI + LS+
Sbjct: 3 PPSASPHRECIPWQGLLLTASLLN--FWNPPTTAKLTIESMPLSV 45
>D90278-1|BAA14322.1| 177|Homo sapiens CD66d protein.
Length = 177
Score = 33.9 bits (74), Expect = 0.55
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSI 513
PP AS ++ + + GLLLT+ L W P++A++TI + LS+
Sbjct: 3 PPSASPHRECIPWQGLLLTASLLN--FWNPPTTAKLTIESMPLSV 45
>D90277-1|BAA14321.1| 252|Homo sapiens nonspecific cross-reacting
antigen protein.
Length = 252
Score = 33.9 bits (74), Expect = 0.55
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSI 513
PP AS ++ + + GLLLT+ L W P++A++TI + LS+
Sbjct: 3 PPSASPHRECIPWQGLLLTASLLN--FWNPPTTAKLTIESMPLSV 45
>BC106728-1|AAI06729.1| 252|Homo sapiens carcinoembryonic
antigen-related cell adhesion molecule 3 protein.
Length = 252
Score = 33.9 bits (74), Expect = 0.55
Identities = 17/45 (37%), Positives = 28/45 (62%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSI 513
PP AS ++ + + GLLLT+ L W P++A++TI + LS+
Sbjct: 3 PPSASPHRECIPWQGLLLTASLLN--FWNPPTTAKLTIESMPLSV 45
>L00693-1|AAA51970.1| 212|Homo sapiens carcinoembryonic antigen
protein.
Length = 212
Score = 31.9 bits (69), Expect = 2.2
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITIGGLALSI 513
PP A ++ + + GLLLT+ L W P++A++TI + LS+
Sbjct: 3 PPSAPPHRECIPWQGLLLTASLLN--FWNPPTTAKLTIESMPLSV 45
>BC111727-1|AAI11728.1| 1077|Homo sapiens transcription elongation
regulator 1 protein.
Length = 1077
Score = 31.9 bits (69), Expect = 2.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 490 IGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 624
+G + P+PA+S TST SS P T TT TS++ TP
Sbjct: 256 VGASTPTTSSPAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 299
>AF017789-1|AAB80727.1| 1098|Homo sapiens putative transcription
factor CA150 protein.
Length = 1098
Score = 31.9 bits (69), Expect = 2.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 490 IGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 624
+G + P+PA+S TST SS P T TT TS++ TP
Sbjct: 256 VGASTPTTSSPAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 299
>AB209910-1|BAD93147.1| 1081|Homo sapiens transcription elongation
regulator 1 variant protein.
Length = 1081
Score = 31.9 bits (69), Expect = 2.2
Identities = 18/45 (40%), Positives = 24/45 (53%)
Frame = +1
Query: 490 IGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 624
+G + P+PA+S TST SS P T TT TS++ TP
Sbjct: 260 VGASTPTTSSPAPAVS-TSTSSSTPSSTTSTTTTATSVAQTVSTP 303
>AF103359-1|AAD20528.1| 119|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 119
Score = 30.7 bits (66), Expect = 5.1
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 201 FPGTVSSTFDHPFSTPVLDLTGTETKSNSVTVQSLPNVSSIIKGYRD 341
F G + T D ST L+LTG +++ ++ + N +I+GY D
Sbjct: 54 FQGRIRITADTLTSTAYLELTGLKSEDTAIYYCARSNEREVIRGYFD 100
>BC139779-1|AAI39780.1| 606|Homo sapiens zinc finger protein 652
protein.
Length = 606
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 16 VPLVVSAASAIPSLVNAFSSSKPPQTDNP 102
+PL S A+ +PS+VN ++ PP NP
Sbjct: 506 IPLTTSPATPVPSVVNTATTPTPPINMNP 534
>BC008988-1|AAH08988.1| 378|Homo sapiens T-cell immunoglobulin and
mucin domain containing 4 protein.
Length = 378
Score = 30.3 bits (65), Expect = 6.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 424 LLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSN 561
+LLTS KES W PS++ +++ + S+ P P S T+ N
Sbjct: 248 VLLTS--KESKVWDLPSTSHVSMWKTSDSVSSPQPGASDTAVPEQN 291
>AB023141-1|BAA76768.2| 617|Homo sapiens KIAA0924 protein protein.
Length = 617
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 16 VPLVVSAASAIPSLVNAFSSSKPPQTDNP 102
+PL S A+ +PS+VN ++ PP NP
Sbjct: 517 IPLTTSPATPVPSVVNTATTPTPPINMNP 545
>X89894-1|CAA61984.1| 443|Homo sapiens nuclear receptor protein.
Length = 443
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 40 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>U12767-1|AAB02581.1| 587|Homo sapiens mitogen induced nuclear
orphan receptor protein.
Length = 587
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 1 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 47
>S81243-1|AAB36006.1| 684|Homo sapiens CHN protein.
Length = 684
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 98 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 144
>M22433-1|AAA51965.1| 141|Homo sapiens carcinoembryonic antigen
protein.
Length = 141
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/38 (39%), Positives = 24/38 (63%)
Frame = +1
Query: 379 PPLASKYQSQLTFVGLLLTSQLKESMCWATPSSARITI 492
PP AS ++ + + GLLLT+ L W P++A++TI
Sbjct: 3 PPSASPHRECIPWQGLLLTASLLN--FWNPPTTAKLTI 38
>D78579-1|BAA11419.1| 626|Homo sapiens neuron derived orphan
receptor protein.
Length = 626
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 40 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-3|CAI95139.1| 443|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 443
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 40 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-2|CAI95138.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 40 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL359710-1|CAM16648.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 51 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
>AL358937-4|CAI95320.1| 626|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 626
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 40 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 86
>AL358937-3|CAM22558.1| 637|Homo sapiens nuclear receptor subfamily
4, group A, member 3 protein.
Length = 637
Score = 29.9 bits (64), Expect = 8.9
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +3
Query: 252 LDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKI 398
+DL TE + + T SLP++S+ ++GY Y + V P +K+
Sbjct: 51 MDLGSTEITATATT--SLPSISTFVEGYSSNYELKPSCVYQMQRPLIKV 97
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,801,162
Number of Sequences: 237096
Number of extensions: 1861282
Number of successful extensions: 5585
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5581
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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