Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060981.seq
(689 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14067.1 68416.m01775 subtilase family protein contains simil... 31 0.95
At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12) ... 29 2.2
At5g57710.1 68418.m07214 heat shock protein-related contains sim... 29 3.8
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 28 5.1
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH... 28 6.7
At3g18540.1 68416.m02358 expressed protein 28 6.7
At3g14240.1 68416.m01803 subtilase family protein contains simil... 28 6.7
At1g43710.1 68414.m05021 serine decarboxylase identical to serin... 28 6.7
At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase fami... 27 8.9
At3g22410.1 68416.m02827 expressed protein 27 8.9
At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containi... 27 8.9
>At3g14067.1 68416.m01775 subtilase family protein contains
similarity to cucumisin-like serine protease GI:3176874
from [Arabidopsis thaliana]
Length = 777
Score = 30.7 bits (66), Expect = 0.95
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +1
Query: 412 TFVGLLLTSQLKESMCWATPSSARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPD 591
T VG Q+++ + + +A+I+ G + PSP ++A S+R N PD
Sbjct: 450 TMVGAKAGDQIRDYIKTSDSPTAKISFLGTLIGPSPPSPRVAAFSSRGPNHLTPVILKPD 509
Query: 592 LTSISINPL 618
+ + +N L
Sbjct: 510 VIAPGVNIL 518
>At5g67360.1 68418.m08494 cucumisin-like serine protease (ARA12)
Asp48; almost identical to cucumisin-like serine
protease (ARA12) GI:3176874 from [Arabidopsis thaliana]
Length = 757
Score = 29.5 bits (63), Expect = 2.2
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +1
Query: 475 SARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 627
+A I+I G + +K PSP ++A S+R N PDL + +N L +
Sbjct: 468 TASISILGTVVGVK-PSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAW 517
>At5g57710.1 68418.m07214 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 990
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +3
Query: 237 FSTPVLDLTGTETKSNSVTVQSLPNVSSIIKGYR 338
FS+P + T ++ +NSVT +P+VSS+ +R
Sbjct: 152 FSSPAVKATIEQSLNNSVTPTPIPSVSSVGLNFR 185
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +3
Query: 213 VSSTFDHPFSTPVLDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAV 368
+S +FD F+T LDL E+ S + +S+ S +K ++ + N E V
Sbjct: 490 LSQSFDPCFNTSKLDLREDESSSGGLDAESVAESSPKLKAFKHV-IANPEVV 540
>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
(MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
thaliana}
Length = 1324
Score = 27.9 bits (59), Expect = 6.7
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 297 QSLPNVSSIIKGYRDAY 347
QSLPN+SS IK ++DA+
Sbjct: 854 QSLPNISSSIKYFKDAF 870
>At3g18540.1 68416.m02358 expressed protein
Length = 268
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 674 PLMTTEALTPAANSF*YGVRGLMEIDVKSGVVGVWNRGFDD 552
P +++++TP+A YG+ GL I K + WN D
Sbjct: 100 PSPSSKSITPSAMFCVYGIIGLSTISPKEDKIPKWNTATGD 140
>At3g14240.1 68416.m01803 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 775
Score = 27.9 bits (59), Expect = 6.7
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +1
Query: 475 SARITIGGLALSIKLPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPY 627
+A I G L I+ P+P +++ S R NP PD+ + +N L +
Sbjct: 475 TATIVFKGTRLGIR-PAPVVASFSARGPNPETPEILKPDVIAPGLNILAAW 524
>At1g43710.1 68414.m05021 serine decarboxylase identical to serine
decarboxylase [Arabidopsis thaliana] GI:15011302;
contains Pfam profile PF00282: Pyridoxal-dependent
decarboxylase conserved domain
Length = 482
Score = 27.9 bits (59), Expect = 6.7
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +3
Query: 264 GTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEA-----VVFPSAPSLKIPVTVDLCW-T 425
G + S+ V P V+ G ++AY+ ++ A +V + L P +D +
Sbjct: 61 GRNIHTTSLAVTE-PEVNDEFTGDKEAYMASVLARYRKTLVERTKNHLGYPYNLDFDYGA 119
Query: 426 TADVTVEGVNVLGHPFIRSHYYWRSRP 506
+ +N LG PFI S+Y SRP
Sbjct: 120 LGQLQHFSINNLGDPFIESNYGVHSRP 146
>At4g20960.1 68417.m03035 cytidine/deoxycytidylate deaminase family
protein similar to SP|P25539 Riboflavin biosynthesis
protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(EC 3.5.4.26) (Riboflavin-specific deaminase);
5-amino-6-(5- phosphoribosylamino)uracil reductase (EC
1.1.1.193) (HTP reductase)] {Escherichia coli}; contains
Pfam profile PF00383: Cytidine and deoxycytidylate
deaminase zinc-binding region
Length = 426
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 262 LAPKPNRTVSL--CNHYRTSPPSSKATATRILSILKLSFFLP-PLA-SKYQSQLTFVGLL 429
LA VSL CNHY +PP ++A + + + P P+ S S+L G+
Sbjct: 133 LAENATAYVSLEPCNHYGRTPPCTEALIKAKVRRVVIGMVDPNPIVFSSGISRLKDAGID 192
Query: 430 LTSQLKESMC 459
+T ++E +C
Sbjct: 193 VTVSVEEELC 202
>At3g22410.1 68416.m02827 expressed protein
Length = 400
Score = 27.5 bits (58), Expect = 8.9
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 204 PGTVSSTFDHPFSTPVLDLTGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSA 383
P +S T P++ V + ++ +SLP S ++G++DA +FPS
Sbjct: 254 PWYLSFTDTSPYNPAVSSSAAAPV--SPLSARSLPFASPAVRGFKDAKPAACRKSLFPST 311
Query: 384 P 386
P
Sbjct: 312 P 312
>At1g05600.1 68414.m00580 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 504
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -2
Query: 466 WPSTLTPSTVTSAVVQQRSTVTGILRLGAEGK 371
WP LTPS ++ + +Q++ VT L+L E K
Sbjct: 6 WPRVLTPSLLSQILKKQKNPVTA-LKLFEEAK 36
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,685,813
Number of Sequences: 28952
Number of extensions: 272479
Number of successful extensions: 998
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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