Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060980.seq
         (684 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    24   1.3  
U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic pr...    21   7.1  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   9.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   9.4  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   9.4  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.4  

>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/38 (28%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = -3

Query: 226 MTKFTEMYRIHSVAFFA----IITDLFYSFCLIFNTEK 125
           +T+F E++ +  +  FA    IIT + +  C++  +EK
Sbjct: 233 VTRFNEIFGLGLLLMFAVSFLIITQVIFVICVLVQSEK 270


>U63132-1|AAB38392.1|  372|Tribolium castaneum decapentaplegic
           protein protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 268 DYPIPDKYNLQKKLITEQL 324
           +YPIPD  N     I + L
Sbjct: 305 EYPIPDHMNTTNHAIVQSL 323


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 376 NPKQIENKQETDRDNREGXNVGSKIEPEASSASHQ 480
           N +    ++E +R  ++      KIE +  S+ HQ
Sbjct: 72  NEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 106


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 307 LITEQLDLIIEKGFYAPRNNVQNN 378
           L+TE+  L++   F    NN+  N
Sbjct: 141 LLTERSSLVLRNDFRLMSNNLNKN 164


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 376 NPKQIENKQETDRDNREGXNVGSKIEPEASSASHQ 480
           N +    ++E +R  ++      KIE +  S+ HQ
Sbjct: 223 NEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 257


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +1

Query: 376 NPKQIENKQETDRDNREGXNVGSKIEPEASSASHQ 480
           N +    ++E +R  ++      KIE +  S+ HQ
Sbjct: 282 NEQARREREEQERHKQQQQEKQQKIEQQTHSSIHQ 316


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,899
Number of Sequences: 336
Number of extensions: 3626
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)