Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060980.seq
(684 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 29 0.47
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 28 1.1
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 27 1.9
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 26 5.8
SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces... 26 5.8
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 26 5.8
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 7.7
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 25 7.7
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 25 7.7
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 528 EAKIKTLIDRGGVVKEKSSXSDYRPIITSDSXCRRF 635
E+K T+ D V EKS SDYR I+ +++ RF
Sbjct: 522 ESKAATIEDLVKYVAEKSGCSDYRKILVTETYKGRF 557
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 28.3 bits (60), Expect = 1.1
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 310 ITEQLDLIIEKGFYAPRNN-VQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKV 486
+ + + ++++ + N NN N T +N E S+IEPE +AS + V
Sbjct: 1175 VADNSNALLKENISSQSNRKADNNGTPSVNNSFTTANNDECSKENSQIEPEGQTASREGV 1234
Query: 487 PDKPENXKQ 513
P + ++
Sbjct: 1235 LSTPRSTRK 1243
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 146 TKRVKKVCDYGEKCYRMNPVHFREFSHPHLESILDNLPVVEI 271
T+R + G YR+N FRE P L +++++ + E+
Sbjct: 374 TQRCIAIQTIGRIIYRLNSGEFREVLSPELHTLVEDAHIYEL 415
>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 548
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = +1
Query: 355 PRNNVQNNPKQIENKQETDR-DNREGXNVGSKIEPEASSASH--QKVPDK 495
P+ N+ NNP ENK + D DNR N+ + E S + VP K
Sbjct: 131 PKPNI-NNPDN-ENKSKHDEFDNRYNININESYKNETKSNQRLGEDVPSK 178
>SPBC21C3.02c |sds3||Sds3-like family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 491
Score = 25.8 bits (54), Expect = 5.8
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Frame = +1
Query: 292 NLQKKLITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNV--GSKIEPEAS 465
NLQ + I ++ + ++ F P NN++++PK ++++ + E V + PE +
Sbjct: 4 NLQSESIPHEI--LPKEPFDLPMNNLKSSPKNKDSEKRINNSIAESEQVVDSALSNPETN 61
Query: 466 SASHQKVPDKPENXKQCFQIMKP 534
+ P P + + P
Sbjct: 62 ANEDIIAPQLPSQNSEIIEKNSP 84
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/62 (25%), Positives = 28/62 (45%)
Frame = +1
Query: 307 LITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKV 486
L T + DL+ + + A + + + K + DN+ ++ S P+ SA QKV
Sbjct: 531 LTTGRYDLVNSQMYVAESSTSELSEKDLTKPNLQSNDNKNSEDLESNTPPQKKSAL-QKV 589
Query: 487 PD 492
D
Sbjct: 590 AD 591
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 53 FLHVICKYFLICECLTFIYLXXFMFLGVENETKRV 157
++H+IC Y+ I T I M LGV + K +
Sbjct: 236 WMHLICSYYGIYTTSTQILSNKIMTLGVSKKRKHL 270
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/62 (27%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = +1
Query: 292 NLQKKLITEQLDLIIEKGFYAPRNN-VQNNPKQIENKQETDRDNREGXNVGSKIEPEASS 468
++ K ++ ++ I+ G NN + N + ++ K +T D +E NV SKI+ A +
Sbjct: 390 SVYKNVLLDRESYIMRLGNKISENNELLNENRVLKEKLQTYLDKKES-NVTSKIKSTAEN 448
Query: 469 AS 474
+S
Sbjct: 449 SS 450
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 580 DFSLTTPPLSISVLI-LASLFENIVLXFQVCPVLFDDLRNLPPVQF 446
DFS T P + S+ + +LFEN+ +V L D+++ L +F
Sbjct: 479 DFS-TMPTMIASIAVAFQTLFENVCDFLKVRAALVDEMQELATKEF 523
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,861
Number of Sequences: 5004
Number of extensions: 57732
Number of successful extensions: 159
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -