Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060980.seq
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1193 + 31634043-31634349,31634685-31634847,31635048-316366...    33   0.28 
09_04_0570 - 18614227-18614574,18614729-18614842,18614933-186151...    28   6.0  
08_02_1282 - 25852113-25852406,25852495-25852668,25852849-258529...    28   6.0  
01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955     28   6.0  

>04_04_1193 +
           31634043-31634349,31634685-31634847,31635048-31636622,
           31636653-31637541,31639401-31641266
          Length = 1599

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 16/60 (26%), Positives = 31/60 (51%)
 Frame = +2

Query: 104 IYLXXFMFLGVENETKRVKKVCDYGEKCYRMNPVHFREFSHPHLESILDNLPVVEITLSQ 283
           +Y     +LG+ENET+R   +     KCY +  +H      P++   ++NL  ++  ++Q
Sbjct: 684 VYCTHLRYLGLENETQRT--LPQALSKCYHLQVLHIGSCGTPNIPEEINNLVSLQHLVAQ 741


>09_04_0570 -
           18614227-18614574,18614729-18614842,18614933-18615130,
           18615290-18615463,18615546-18615752,18615886-18616180,
           18616269-18617275
          Length = 780

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 367 VQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPENXK 510
           V+N   + E   + +RD ++G  V S  EP   S S Q   +  E+ +
Sbjct: 4   VENMEGREERSTDVERDGKQGKEVESDYEPARDSVSSQGEANSNEDTR 51


>08_02_1282 -
           25852113-25852406,25852495-25852668,25852849-25852940,
           25853465-25853587,25853691-25853721,25854295-25854434,
           25854871-25854932,25855027-25855103,25855766-25855868,
           25856146-25856207,25857213-25857374
          Length = 439

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/42 (33%), Positives = 17/42 (40%)
 Frame = +1

Query: 391 ENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPENXKQC 516
           E KQETD  N      GS   P   ++      + PEN   C
Sbjct: 232 EEKQETDNHNAVVLTNGSSSNPGMEASQDTGSKENPENNPDC 273


>01_06_1095 - 34484064-34484492,34484716-34485041,34485505-34485955
          Length = 401

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/60 (23%), Positives = 31/60 (51%)
 Frame = +1

Query: 310 ITEQLDLIIEKGFYAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVP 489
           +T + + +  K F   R+     PK++   Q+ ++   +G  +    E  ++S+SHQ++P
Sbjct: 268 VTNKDNKVTTKKFKPQRSKKPKKPKKL---QQEEQPQNQGIVIRQPSESGSASSSHQEIP 324


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,176,779
Number of Sequences: 37544
Number of extensions: 337642
Number of successful extensions: 727
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)