Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060980.seq
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   5e-05
SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)                     43   2e-04
SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)                   31   0.66 
SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     30   2.0  
SB_23890| Best HMM Match : Oxidored_q4 (HMM E-Value=1)                 29   3.5  
SB_5549| Best HMM Match : PT (HMM E-Value=1.9)                         29   4.6  
SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  

>SB_22259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = +2

Query: 137 ENETKRVKKVCDYGEKCYRMNPVHFREFSHP--HLESILDNLPVVEITLSQINTISRRN 307
           +  + R KKVC YG KCY+ NP H + F HP  H +S   +    + T S + +++ R+
Sbjct: 292 DEASDRKKKVCMYGSKCYQTNPDHMKNFLHPERHTKSTDSDRSADDNTTSNVFSLTARS 350


>SB_52003| Best HMM Match : BTB (HMM E-Value=1e-16)
          Length = 501

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 GVENETKRVKKVCDYGEKCYRMNPVHFREFSH 226
           G    +K  K +C YG KCYR NPVH  E+ H
Sbjct: 31  GKRKRSKDEKPLCKYGSKCYRKNPVHMEEYRH 62


>SB_43018| Best HMM Match : Ank (HMM E-Value=2.6e-08)
          Length = 169

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = +1

Query: 349 YAPRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPD 492
           Y  R+N Q++P+ +  ++ + +D+ +G  +  +  P+A++ S+  + D
Sbjct: 36  YRNRHNSQSSPETVNPRRNSSKDSVQGRKLPKREAPKATTTSYISIKD 83


>SB_44730| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 1346

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = +1

Query: 352 APRNNVQNNPKQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPENXKQCFQ 522
           APR   +   + + N+QE   D     N   K  P+ SS+S++K   KP+N ++ F+
Sbjct: 248 APRRGSKRK-RGVNNQQEKRTDELSHNNKEKKEYPKVSSSSYRK---KPDNARKQFE 300


>SB_23890| Best HMM Match : Oxidored_q4 (HMM E-Value=1)
          Length = 317

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
 Frame = +1

Query: 328 LIIEKGFYAPRNNVQNNPKQIENKQETDRDNRE--GXNVGSKIEPEASS---ASHQKVPD 492
           +I+ +    PRN     P  +EN+ + + DN E  G N   +   +AS    ASH     
Sbjct: 217 MIVVRCHINPRNKTDELPSDLENENDLEIDNIETQGANTDKESTGKASEQDIASHNTRLS 276

Query: 493 KPENXK 510
             EN K
Sbjct: 277 SSENPK 282


>SB_5549| Best HMM Match : PT (HMM E-Value=1.9)
          Length = 282

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 349 YAPRNNVQNNP-KQIENKQETDRDNREGXNVGSKIEPEASSASHQKVPDKPENXKQCFQI 525
           Y P +  +  P K+ E+K E   +++       K+E +      +K  D PE   +  Q 
Sbjct: 202 YKPEDKPEKKPEKKPEDKSEDKPEDKHKDKPEDKLEDKPEDKKEEKPEDNPEEKPEDKQE 261

Query: 526 MKPK 537
            KP+
Sbjct: 262 DKPE 265


>SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 201

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 388 IENKQETDRDNREGXNVGSKIEPEASSAS 474
           +EN Q  DRD     +V   +EP+ S AS
Sbjct: 39  VENNQVNDRDIERIGHVNETVEPQVSGAS 67


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,085
Number of Sequences: 59808
Number of extensions: 401067
Number of successful extensions: 1045
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)